Rh7BG349400
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
N/A
Physical Location & Seq
Reverse (-)
36431313 .. 36431981
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG349400.1

Sequence Viewer

Length: 669 bp
ATGGAGGCTGGAGTAGCAAGTAACCGTTTAGATGGGCATATCGTGGCTGAAAATATGGGCACTGGGAGCAGTGAAACGTGCATCAGAAACATGGAGGCTGTTGATGTAGATGGTGGGAAAACAAGGAAGAAGAAGGCCAAGGCAAACACCCTTGTTAATGGAGAAGATAGCAGCAGAAATGTGGAGGTTGTTAATGTAGAAGATAGTAAAAAAAGAAAGAAGGCCAAGTCAGAGAAACATGTTGTAGAAGATTGCAACAGAAAATCAGAGGCTGTTAATGTAGGAAATAGTAAGAAAAGGAAGAAGTCCAAGTCGGAGAAACGTGGTATTGCGGAGATTTGCAATGAAGACAAGAAAAAGGCCAGGTCAAGTAAAGGCAGCTTAATAGCCCAAAAAAGCATTGGAGCTCCTGACAATTCTGAAAAATCGACCCCTAAAAAAGCATCAAAAAGAGTAAGTTTTGCTGATGATGTGGAGGTCTTCTCACCGTCTGATGGCCCAAACGATGAGCATGAAGACCTTGTAAGAGGTAAACGGTTTTCAGAAGAAGAAGACAAGATTGTGAAAGAGGCTGTTTTAAGATACATAGAGGAACATGCGGGGATGATGGCCTCAACATGGTTCTGCGGTGTAAGTCCCACCCTGAAGTCAAAAACCACCCAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

222

Amino Acids

24.34

Weight (kDa)

9.2

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 332, 599, 627
AcuI CTGAAG 1 cut(s) 665
AfiI CCNNNNNNNGG 2 cut(s) 494, 618
AflIII ACRYGT 1 cut(s) 238
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 2 cut(s) 381, 407
AluI AGCT 2 cut(s) 381, 407
Alw21I GWGCWC 1 cut(s) 409
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 5 cut(s) 135, 222, 360, 496, 609
ApeKI GCWGC 2 cut(s) 171, 378
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 477
BaeGI GKGCMC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 409
BbsI GAAGAC 4 cut(s) 354, 472, 522, 558
Bbv12I GWGCWC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 183, 390
BccI CCATC 4 cut(s) 26, 104, 488, 601
BciT130I CCWGG 1 cut(s) 364
BisI GCNGC 2 cut(s) 172, 379
BlsI GCNGC 2 cut(s) 173, 380
Bme1390I CCNGG 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 497
BmrFI CCNGG 1 cut(s) 364
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 90, 452
BmuI ACTGGG 1 cut(s) 72
BpiI GAAGAC 4 cut(s) 354, 472, 522, 558
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BpmI CTGGAG 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 2 cut(s) 494, 618
Bse1I ACTGG 1 cut(s) 67
Bse3DI GCAATG 1 cut(s) 349
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 2 cut(s) 494, 618
BseMI GCAATG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 2 cut(s) 183, 390
BshFI GGCC 5 cut(s) 137, 224, 362, 498, 611
BsiHKAI GWGCWC 1 cut(s) 409
BslFI GGGAC 1 cut(s) 621
BslI CCNNNNNNNGG 2 cut(s) 494, 618
BsmFI GGGAC 1 cut(s) 621
BsnI GGCC 5 cut(s) 137, 224, 362, 498, 611
Bsp1286I GDGCHC 2 cut(s) 62, 409
BspACI CCGC 3 cut(s) 332, 599, 627
BspANI GGCC 5 cut(s) 137, 224, 362, 498, 611
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 3 cut(s) 26, 489, 537
BstF5I GGATG 1 cut(s) 609
BstMWI GCNNNNNNNGC 2 cut(s) 14, 66
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 2 cut(s) 242, 599
BstSCI CCNGG 1 cut(s) 362
BstSLI GKGCMC 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 183, 390
BstV2I GAAGAC 4 cut(s) 354, 472, 522, 558
BsuRI GGCC 5 cut(s) 137, 224, 362, 498, 611
BtsCI GGATG 1 cut(s) 609
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 60, 76
CaiI CAGNNNCTG 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 497
CviAII CATG 5 cut(s) 91, 239, 512, 596, 618
Ecl136II GAGCTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 407
Eco57I CTGAAG 1 cut(s) 665
EcoICRI GAGCTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 362
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 5 cut(s) 94, 242, 515, 599, 621
FaiI YATR 8 cut(s) 39, 56, 92, 240, 513, 587, 597, 619
FaqI GGGAC 1 cut(s) 621
FatI CATG 5 cut(s) 90, 238, 511, 595, 617
FauI CCCGC 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 172, 379
FokI GGATG 1 cut(s) 616
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 172, 379
GluI GCNGC 2 cut(s) 172, 379
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 5 cut(s) 137, 224, 362, 498, 611
Hin1II CATG 5 cut(s) 94, 242, 515, 599, 621
HphI GGTGA 1 cut(s) 477
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 7 cut(s) 86, 232, 268, 316, 421, 493, 544
Hpy188III TCNNGA 1 cut(s) 410
Hpy8I GTNNAC 1 cut(s) 533
HpyAV CCTTC 2 cut(s) 127, 214
HpyCH4III ACNGT 3 cut(s) 26, 489, 537
HpyCH4IV ACGT 2 cut(s) 77, 322
HpyCH4V TGCA 3 cut(s) 81, 255, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 66
HpySE526I ACGT 2 cut(s) 77, 322
Hsp92II CATG 5 cut(s) 94, 242, 515, 599, 621
LmnI GCTCC 3 cut(s) 66, 404, 412
LpnPI CCDG 5 cut(s) 48, 349, 376, 423, 656
Lsp1109I GCAGC 2 cut(s) 183, 390
LweI GCATC 2 cut(s) 90, 452
MaeII ACGT 2 cut(s) 77, 322
MaeIII GTNAC 1 cut(s) 20
MhlI GDGCHC 2 cut(s) 62, 409
MluCI AATT 2 cut(s) 415, 664
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 8 cut(s) 88, 178, 262, 469, 521, 562, 583, 622
MseI TTAA 5 cut(s) 156, 192, 276, 383, 578
MspR9I CCNGG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 14, 66
NlaIII CATG 5 cut(s) 94, 242, 515, 599, 621
NspI RCATGY 2 cut(s) 242, 599
PciI ACATGT 1 cut(s) 238
PkrI GCNGC 2 cut(s) 173, 380
PscI ACATGT 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspPI GGNCC 1 cut(s) 497
PstNI CAGNNNCTG 1 cut(s) 272
SacI GAGCTC 1 cut(s) 409
SaqAI TTAA 5 cut(s) 156, 192, 276, 383, 578
SatI GCNGC 2 cut(s) 172, 379
Sau96I GGNCC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 2 cut(s) 62, 409
SetI ASST 9 cut(s) 80, 189, 325, 368, 383, 409, 480, 522, 532
SfaNI GCATC 2 cut(s) 90, 452
Sse9I AATT 2 cut(s) 415, 664
SsiI CCGC 3 cut(s) 332, 599, 627
SstI GAGCTC 1 cut(s) 409
StyD4I CCNGG 1 cut(s) 362
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 3 cut(s) 26, 489, 537
TaiI ACGT 2 cut(s) 80, 325
TaqI TCGA 1 cut(s) 428
TasI AATT 2 cut(s) 415, 664
Tru1I TTAA 5 cut(s) 156, 192, 276, 383, 578
Tru9I TTAA 5 cut(s) 156, 192, 276, 383, 578
TscAI CASTG 2 cut(s) 67, 76
TseI GCWGC 2 cut(s) 171, 378
TspDTI ATGAA 2 cut(s) 360, 528
TspRI CASTG 2 cut(s) 67, 76
XceI RCATGY 2 cut(s) 242, 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.