Rh7BG219600
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
N/A
Physical Location & Seq
Reverse (-)
18872919 .. 18873779
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG219600.1

Sequence Viewer

Length: 861 bp
ATGTCCTCACCCACTCCCCGCCGCCGCTTCCCGCCGCTGTGCTGGACCGACGACGAGGCCCAAGCCCTCATCTCCGTCTTCAAGGACAAGTGGTCCTCCCTCGGCCGCACCAATCTCAAAGCCAACGACTGGGATGACGTCGCCGCCACCCTCGCCGCCCAATTCCCCCTCGTCTCCCCCTCCAAGACCGCCGCGCAGTGCCACAACAAGATCGAGAAGCTCCGCAAACGGTACCGCTCCGAGAAGCAGCGGGCCTCGACCCGACCCGGTCGGTTCTCGCCTTGGGCTTTGTATCGGTTTATGGAGGAATTGGAGGGCGAGTCTGGTAAGTCGGGTTTCGGGTCGGGCCACACGGCCCGTAAAGGTGAGGGGAATTCGAGTTCTAGGTTTTTAGCTGATTTGGATGAATTTGTTGATGTACGGAGTGGTGGTGGTGATGCTGGTTTTCCTGTGAAATCATTAGGTCATAGGAATTTGGCGCCTTTGTTTAATCCTAAGATGAAGTTGAAGAAGAATGAAAGCTCAGGGTTTCTTCGAAGATTCGGAGGAGTGGATTCTAGTGGTGTTGGTGTTAAAGATTTGGGAGGGAGTTCGGGTTTGTTGAGGAGTGTTAGGGAGGTTGATCCGGTTGAAGAGATGGTTTCGTCGATTCAGTTGCTTGGGGAGAAGTATATGAAGGTGGAGAAGAGGAAGATGGAGATGGCTAGGGAGATTGTGATGATGCAAATGGACATGGAGATGAAGCAGACTCAGGTGATTATGGAGTCACAGCAACAGATAGTGAATGCTTGTGTGAGTGCATTGTTGGACAGCAAGAAGAAGAAGAAGAGGAAGATCAAGGCGGTGTCGACTGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

286

Amino Acids

31.89

Weight (kDa)

9.76

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 14 - 104 1.8e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 231
AccB1I GGYRCC 2 cut(s) 231, 478
AccB7I CCANNNNNTGG 1 cut(s) 129
AccBSI CCGCTC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 848
AccII CGCG 1 cut(s) 194
AclWI GGATC 1 cut(s) 617
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 3 cut(s) 373, 407, 472
AcyI GRCGYC 2 cut(s) 138, 479
AfaI GTAC 2 cut(s) 233, 420
AfiI CCNNNNNNNGG 1 cut(s) 129
AgsI TTSAA 3 cut(s) 82, 508, 632
AhdI GACNNNNNGTC 1 cut(s) 91
AloI GAACNNNNNNTCC 2 cut(s) 364, 396
AluBI AGCT 3 cut(s) 220, 395, 522
AluI AGCT 3 cut(s) 220, 395, 522
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 617
AoxI GGCC 5 cut(s) 57, 103, 252, 346, 354
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 3 cut(s) 373, 407, 472
Asp718I GGTACC 1 cut(s) 231
AspLEI GCGC 2 cut(s) 196, 481
AspS9I GGNCC 6 cut(s) 45, 58, 93, 252, 346, 355
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 3 cut(s) 377, 446, 766
AsuII TTCGAA 1 cut(s) 535
AvaII GGWCC 2 cut(s) 45, 93
BanI GGYRCC 2 cut(s) 231, 478
BbsI GAAGAC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 259
BccI CCATC 3 cut(s) 631, 688, 694
BceAI ACGGC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 637, 671
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 4 cut(s) 384, 558, 705, 859
BfoI RGCGCY 1 cut(s) 482
BisI GCNGC 8 cut(s) 22, 25, 35, 106, 144, 156, 192, 248
BlsI GCNGC 8 cut(s) 23, 26, 36, 107, 145, 157, 193, 249
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 2 cut(s) 45, 93
BmeRI GACNNNNNGTC 1 cut(s) 91
BmgT120I GGNCC 6 cut(s) 45, 58, 93, 252, 346, 355
BmiI GGNNCC 2 cut(s) 233, 480
BmrFI CCNGG 1 cut(s) 267
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 2 cut(s) 427, 711
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 523
Bpu14I TTCGAA 1 cut(s) 535
BpuMI CCSGG 1 cut(s) 267
BsaHI GRCGYC 2 cut(s) 138, 479
BsaJI CCNNGG 2 cut(s) 100, 281
BsaWI WCCGGW 1 cut(s) 625
BsaXI ACNNNNNCTCC 6 cut(s) 305, 335, 415, 445, 580, 610
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 100, 281
BseGI GGATG 2 cut(s) 139, 409
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 537, 764
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 2 cut(s) 561, 619
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 194
Bsh1285I CGRYCG 2 cut(s) 106, 271
BshFI GGCC 5 cut(s) 59, 105, 254, 348, 356
BshNI GGYRCC 2 cut(s) 231, 478
BsiEI CGRYCG 2 cut(s) 106, 271
BsiSI CCGG 2 cut(s) 267, 626
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 178
BsmBI CGTCTC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 5 cut(s) 59, 105, 254, 348, 356
Bsp119I TTCGAA 1 cut(s) 535
Bsp143I GATC 3 cut(s) 210, 622, 834
BspANI GGCC 5 cut(s) 59, 105, 254, 348, 356
BspCNI CTCAG 2 cut(s) 536, 763
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 233, 480
BspPI GGATC 1 cut(s) 617
BspT104I TTCGAA 1 cut(s) 535
BspT107I GGYRCC 2 cut(s) 231, 478
BsrBI CCGCTC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 100, 281
BssMI GATC 3 cut(s) 210, 622, 834
BssNI GRCGYC 2 cut(s) 138, 479
BssT1I CCWWGG 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 3 cut(s) 627, 680, 821
BstACI GRCGYC 2 cut(s) 138, 479
BstBI TTCGAA 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 3 cut(s) 495, 523, 750
BstF5I GGATG 2 cut(s) 139, 409
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 482
BstHHI GCGC 2 cut(s) 196, 481
BstKTI GATC 3 cut(s) 213, 625, 837
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 3 cut(s) 210, 622, 834
BstMCI CGRYCG 2 cut(s) 106, 271
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 265
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 70
BstZI CGGCCG 1 cut(s) 103
BsuRI GGCC 5 cut(s) 59, 105, 254, 348, 356
BtsCI GGATG 2 cut(s) 139, 409
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 2 cut(s) 196, 481
Cfr13I GGNCC 6 cut(s) 45, 58, 93, 252, 346, 355
Csp6I GTAC 2 cut(s) 232, 419
CviAII CATG 1 cut(s) 733
CviQI GTAC 2 cut(s) 232, 419
DdeI CTNAG 3 cut(s) 495, 523, 750
DinI GGCGCC 1 cut(s) 480
DpnI GATC 3 cut(s) 212, 624, 836
DpnII GATC 3 cut(s) 210, 622, 834
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 3 cut(s) 627, 680, 821
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 3 cut(s) 627, 680, 821
EclXI CGGCCG 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 281
Eco47I GGWCC 2 cut(s) 45, 93
Eco52I CGGCCG 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 281
EgeI GGCGCC 1 cut(s) 480
EheI GGCGCC 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 281
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 1 cut(s) 736
FaiI YATR 6 cut(s) 302, 468, 672, 674, 734, 761
FatI CATG 1 cut(s) 732
FauI CCCGC 3 cut(s) 26, 39, 243
FblI GTMKAC 1 cut(s) 848
Fnu4HI GCNGC 8 cut(s) 22, 25, 35, 106, 144, 156, 192, 248
FokI GGATG 2 cut(s) 146, 416
Fsp4HI GCNGC 8 cut(s) 22, 25, 35, 106, 144, 156, 192, 248
FspBI CTAG 4 cut(s) 384, 558, 705, 859
GlaI GCGC 2 cut(s) 195, 480
GluI GCNGC 8 cut(s) 22, 25, 35, 106, 144, 156, 192, 248
HaeII RGCGCY 1 cut(s) 482
HaeIII GGCC 5 cut(s) 59, 105, 254, 348, 356
HapII CCGG 2 cut(s) 267, 626
HhaI GCGC 2 cut(s) 196, 481
Hin1I GRCGYC 2 cut(s) 138, 479
Hin1II CATG 1 cut(s) 736
Hin6I GCGC 2 cut(s) 194, 479
HinP1I GCGC 2 cut(s) 194, 479
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HinfI GANTC 7 cut(s) 320, 540, 554, 649, 748, 764, 854
HpaII CCGG 2 cut(s) 267, 626
HphI GGTGA 3 cut(s) 377, 446, 766
Hpy166II GTNNAC 1 cut(s) 849
Hpy188I TCNGA 2 cut(s) 241, 545
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 849
Hpy99I CGWCG 4 cut(s) 53, 56, 143, 649
HpyAV CCTTC 1 cut(s) 670
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 724, 800
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 3 cut(s) 495, 523, 750
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 2 cut(s) 138, 479
Hsp92II CATG 1 cut(s) 736
HspAI GCGC 2 cut(s) 194, 479
KasI GGCGCC 1 cut(s) 478
KpnI GGTACC 1 cut(s) 235
Kzo9I GATC 3 cut(s) 210, 622, 834
LmnI GCTCC 2 cut(s) 225, 242
LpnPI CCDG 9 cut(s) 28, 115, 280, 309, 426, 462, 510, 639, 737
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 2 cut(s) 427, 711
MaeI CTAG 4 cut(s) 384, 558, 705, 859
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 765
MalI GATC 3 cut(s) 212, 624, 836
MbiI CCGCTC 1 cut(s) 237
MboI GATC 3 cut(s) 210, 622, 834
MluCI AATT 5 cut(s) 161, 308, 373, 407, 472
Mly113I GGCGCC 1 cut(s) 479
MlyI GAGTC 3 cut(s) 329, 742, 773
MmeI TCCRAC 1 cut(s) 786
MseI TTAA 2 cut(s) 489, 573
MslI CAYNNNNRTG 1 cut(s) 737
MspA1I CMGCKG 2 cut(s) 37, 250
MspI CCGG 2 cut(s) 267, 626
MspR9I CCNGG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 790
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 152
NarI GGCGCC 1 cut(s) 479
NciI CCSGG 1 cut(s) 267
NdeII GATC 3 cut(s) 210, 622, 834
NlaIII CATG 1 cut(s) 736
NlaIV GGNNCC 2 cut(s) 233, 480
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 765
NspV TTCGAA 1 cut(s) 535
PctI GAATGC 1 cut(s) 790
PfeI GAWTC 4 cut(s) 540, 554, 649, 854
PflFI GACNNNGTC 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 129
PkrI GCNGC 8 cut(s) 23, 26, 36, 107, 145, 157, 193, 249
PleI GAGTC 3 cut(s) 328, 742, 772
PluTI GGCGCC 1 cut(s) 482
PpsI GAGTC 3 cut(s) 328, 742, 772
PspN4I GGNNCC 2 cut(s) 233, 480
PspPI GGNCC 6 cut(s) 45, 58, 93, 252, 346, 355
PsyI GACNNNGTC 1 cut(s) 267
RsaI GTAC 2 cut(s) 233, 420
RsaNI GTAC 2 cut(s) 232, 419
RseI CAYNNNNRTG 1 cut(s) 737
SalI GTCGAC 1 cut(s) 847
SaqAI TTAA 2 cut(s) 489, 573
SatI GCNGC 8 cut(s) 22, 25, 35, 106, 144, 156, 192, 248
Sau3AI GATC 3 cut(s) 210, 622, 834
Sau96I GGNCC 6 cut(s) 45, 58, 93, 252, 346, 355
SchI GAGTC 3 cut(s) 329, 742, 773
ScrFI CCNGG 1 cut(s) 267
SfaNI GCATC 2 cut(s) 427, 711
SfoI GGCGCC 1 cut(s) 480
SfuI TTCGAA 1 cut(s) 535
SinI GGWCC 2 cut(s) 45, 93
SmiMI CAYNNNNRTG 1 cut(s) 737
Sse9I AATT 5 cut(s) 161, 308, 373, 407, 472
SspDI GGCGCC 1 cut(s) 478
SspMI CTAG 4 cut(s) 384, 558, 705, 859
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 1 cut(s) 141
TaqI TCGA 6 cut(s) 213, 257, 377, 535, 647, 848
TaqII GACCGA 1 cut(s) 62
TasI AATT 5 cut(s) 161, 308, 373, 407, 472
TauI GCSGC 7 cut(s) 24, 27, 37, 108, 146, 158, 194
TfiI GAWTC 4 cut(s) 540, 554, 649, 854
Tru1I TTAA 2 cut(s) 489, 573
Tru9I TTAA 2 cut(s) 489, 573
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 1 cut(s) 765
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 765
TspDTI ATGAA 5 cut(s) 420, 515, 531, 689, 755
TspGWI ACGGA 2 cut(s) 64, 436
TspRI CASTG 1 cut(s) 203
Tth111I GACNNNGTC 1 cut(s) 267
Van91I CCANNNNNTGG 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 45, 93
XapI RAATTY 3 cut(s) 373, 407, 472
XmiI GTMKAC 1 cut(s) 848
XspI CTAG 4 cut(s) 384, 558, 705, 859
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.