Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2977674 .. 2980504

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG045800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGGAAAGCAATCTAATACAGTTGCATCTCCTGGAATAAGGAGAGGTCCATGGACTCCTCAGGAGGACAAGAAGCTCTTTGCTTTCGTTCAACAACATGGCCATGGAAGCTGGCGTTCCTTGCCAGAGAAAGCTGCTGCTAATGGAGATAGGCATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

53

Amino Acids

5.87

Weight (kDa)

10.42

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 45	5.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	76, 111, 134
AluI	AGCT	3 cut(s)	76, 111, 134
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	134, 137
AspS9I	GGNCC	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	121, 124
BciT130I	CCWGG	1 cut(s)	33
BisI	GCNGC	2 cut(s)	135, 138
BlsI	GCNGC	2 cut(s)	136, 139
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	50, 103
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	50, 103
BseMII	CTCAG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	121, 124
BshFI	GGCC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	102
Bsp19I	CCATGG	2 cut(s)	50, 103
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	50, 103
BssT1I	CCWWGG	2 cut(s)	50, 103
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	2 cut(s)	50, 103
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 121
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	121, 124
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	2 cut(s)	50, 103
Cac8I	GCNNGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	47
CviAII	CATG	4 cut(s)	51, 98, 104, 155
CviJI	RGCY	4 cut(s)	76, 102, 111, 134
CviKI_1	RGCY	4 cut(s)	76, 102, 111, 134
DdeI	CTNAG	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	2 cut(s)	50, 103
Eco47I	GGWCC	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	50, 103
ErhI	CCWWGG	2 cut(s)	50, 103
FaeI	CATG	4 cut(s)	54, 101, 107, 158
FaiI	YATR	5 cut(s)	52, 99, 105, 156, 160
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	4 cut(s)	50, 97, 103, 154
Fnu4HI	GCNGC	2 cut(s)	135, 138
Fsp4HI	GCNGC	2 cut(s)	135, 138
GluI	GCNGC	2 cut(s)	135, 138
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	54, 101, 107, 158
HinfI	GANTC	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 121
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	54, 101, 107, 158
LpnPI	CCDG	5 cut(s)	18, 45, 47, 97, 138
Lsp1109I	GCAGC	2 cut(s)	121, 124
LweI	GCATC	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	3 cut(s)	38, 58, 69
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	108, 121
NcoI	CCATGG	2 cut(s)	50, 103
NlaIII	CATG	4 cut(s)	54, 101, 107, 158
NspI	RCATGY	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	136, 139
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	102
SatI	GCNGC	2 cut(s)	135, 138
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	4 cut(s)	49, 78, 113, 136
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	2 cut(s)	50, 103
TaaI	ACNGT	1 cut(s)	22
TseI	GCWGC	2 cut(s)	134, 137
VpaK11BI	GGWCC	1 cut(s)	47
XceI	RCATGY	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.