Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

66325913 .. 66326829

Gene Structure 917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG509600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGGCGAAGCAGTACTTACTATGATAAGAATGATGGACTGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCAGATTGTCAAAGCCTACGTCAAAAAACACGGTGTCGGAAAATGGGGCAAACTATCCAGGGAAACAGGAAATTCAAGTCTGAAGAGATGTGGGAAGAGGGTGAGACTCAGGTGGTTGAACTATCTGAGGCCTGATATCATCAAAGGCAACATTACAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCTTGGGAAACAGATGGTCATTGATAGCCGGAAGGTTACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTACAACAAGAAAATCACTTAGAAGTGTCTAAAGATGAGGAGAGATCAAGGAGGGCTTGTCATCCTCTGCCGCTGCTGCAGATGAGGACGACCCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

153

Amino Acids

17.86

Weight (kDa)

10.04

Isoelectric Point (pI)

64.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 66	2.2e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 80	3.3e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	72 - 116	2.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	76 - 125	2.2e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AciI	CCGC	1 cut(s)	431
AcsI	RAATTY	2 cut(s)	142, 340
AcuI	CTGAAG	2 cut(s)	62, 173
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	2 cut(s)	147, 190
AjnI	CCWGG	3 cut(s)	53, 128, 304
AluBI	AGCT	2 cut(s)	244, 361
AluI	AGCT	2 cut(s)	244, 361
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	169
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	3 cut(s)	59, 433, 436
ApoI	RAATTY	2 cut(s)	142, 340
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
AsuHPI	GGTGA	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	46, 420, 423
BccI	CCATC	2 cut(s)	29, 273
BciT130I	CCWGG	3 cut(s)	55, 130, 306
BcoDI	GTCTC	1 cut(s)	169
BfmI	CTRYAG	1 cut(s)	437
BisI	GCNGC	4 cut(s)	60, 431, 434, 437
BlsI	GCNGC	4 cut(s)	61, 432, 435, 438
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	3 cut(s)	55, 130, 306
BmiI	GGNNCC	2 cut(s)	52, 257
BmrFI	CCNGG	3 cut(s)	55, 130, 306
BpiI	GAAGAC	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	54, 129, 305
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	3 cut(s)	55, 130, 306
BseDI	CCNNGG	3 cut(s)	54, 129, 305
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	2 cut(s)	188, 193
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	46, 420, 423
BshFI	GGCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	404
BspACI	CCGC	1 cut(s)	431
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	2 cut(s)	189, 192
BspLI	GGNNCC	2 cut(s)	52, 257
BspMAI	CTGCAG	1 cut(s)	441
BspQI	GCTCTTC	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	54, 129, 305
BssMI	GATC	1 cut(s)	404
Bst2UI	CCWGG	3 cut(s)	55, 130, 306
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	3 cut(s)	149, 161, 234
BstDEI	CTNAG	3 cut(s)	179, 197, 379
BstEII	GGTNACC	1 cut(s)	300
BstENI	CCTNNNNNAGG	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	1 cut(s)	407
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 436
BstNI	CCWGG	3 cut(s)	55, 130, 306
BstPI	GGTNACC	1 cut(s)	300
BstSCI	CCNGG	3 cut(s)	53, 128, 304
BstSFI	CTRYAG	1 cut(s)	437
BstV1I	GCAGC	3 cut(s)	46, 420, 423
BstV2I	GAAGAC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	15
CviJI	RGCY	9 cut(s)	53, 59, 86, 202, 244, 256, 293, 361, 416
CviKI_1	RGCY	9 cut(s)	53, 59, 86, 202, 244, 256, 293, 361, 416
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	3 cut(s)	179, 197, 379
DpnI	GATC	1 cut(s)	406
DpnII	GATC	1 cut(s)	404
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	149, 161, 234
EarI	CTCTTC	3 cut(s)	149, 161, 234
Ecl136II	GAGCTC	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	62, 173
Eco91I	GGTNACC	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	352
EcoO65I	GGTNACC	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	3 cut(s)	53, 128, 304
EcoRV	GATATC	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	246
FaiI	YATR	1 cut(s)	24
FalI	AAGNNNNNCTT	3 cut(s)	33, 400, 432
Fnu4HI	GCNGC	4 cut(s)	60, 431, 434, 437
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	60, 431, 434, 437
GluI	GCNGC	4 cut(s)	60, 431, 434, 437
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	294
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	110, 153, 198
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	62, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 436
HpyF3I	CTNAG	3 cut(s)	179, 197, 379
HpySE526I	ACGT	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	404
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	50, 261
Lsp1109I	GCAGC	3 cut(s)	46, 420, 423
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	1 cut(s)	406
MboI	GATC	1 cut(s)	404
MboII	GAAGA	7 cut(s)	55, 80, 166, 178, 242, 248, 251
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	142, 340
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	7 cut(s)	162, 192, 348, 391, 405, 435, 438
MseI	TTAA	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	3 cut(s)	55, 130, 306
MvaI	CCWGG	3 cut(s)	55, 130, 306
MwoI	GCNNNNNNNGC	2 cut(s)	59, 436
NdeII	GATC	1 cut(s)	404
NlaIV	GGNNCC	2 cut(s)	52, 257
PceI	AGGCCT	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	61, 432, 435, 438
PleI	GAGTC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	3 cut(s)	53, 128, 304
PspEI	GGTNACC	1 cut(s)	300
PspGI	CCWGG	3 cut(s)	53, 128, 304
PspN4I	GGNNCC	2 cut(s)	52, 257
PstI	CTGCAG	1 cut(s)	441
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	4 cut(s)	60, 431, 434, 437
Sau3AI	GATC	1 cut(s)	404
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	3 cut(s)	55, 130, 306
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	6 cut(s)	93, 185, 246, 302, 350, 363
SfcI	CTRYAG	1 cut(s)	437
Sse9I	AATT	2 cut(s)	142, 340
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	431
SstI	GAGCTC	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	3 cut(s)	53, 128, 304
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	93
TasI	AATT	2 cut(s)	142, 340
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseI	GCWGC	3 cut(s)	59, 433, 436
TspDTI	ATGAA	2 cut(s)	249, 336
XagI	CCTNNNNNAGG	1 cut(s)	352
XapI	RAATTY	2 cut(s)	142, 340
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.