Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

67887428 .. 67888921

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG506600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGGAACCAACAAGCTCTTACTGCTTCACCAATCACAATGAAAAGAAAGAAGATCATCAGCGTTATCATCTTGAAAGTACCACCACAACTACTACAAATAAAACAACATTTTTCTCTGGTGCCACCGTTGAAGCCGAAGCAAACAAGAATGATATAGAGCTAGCTGGAGACGACTTGAGCAATGATGTGACGTGGAATGATTTCATAATGGATCTAAATGAAGGTCAGTTAGACATATCTGAATTTCTCCAAACAGACTTTTCAAAGCTTTGTGAATCGGAGAGTCCCATGAAGGTAGAAGTTGGAGGTTGCAGCACCAATCATGAGCTGCCAAATAATTGGGCAGGCGGCCGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

120

Amino Acids

13.45

Weight (kDa)

4.37

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AciI	CCGC	2 cut(s)	351, 355
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	245
AfaI	GTAC	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	77, 134, 267
AjiI	CACGTC	1 cut(s)	195
AluBI	AGCT	6 cut(s)	18, 163, 167, 271, 331, 360
AluI	AGCT	6 cut(s)	18, 163, 167, 271, 331, 360
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	3 cut(s)	315, 331, 357
ApoI	RAATTY	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	22
AsuNHI	GCTAGC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	318, 327
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	164, 361
BisI	GCNGC	5 cut(s)	316, 332, 352, 355, 358
BlsI	GCNGC	5 cut(s)	317, 333, 353, 356, 359
BmgBI	CACGTC	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	9, 124
BmtI	GCTAGC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	190
BseX3I	CGGCCG	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	318, 327
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	165
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	55, 214
BspACI	CCGC	2 cut(s)	351, 355
BspANI	GGCC	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	9, 124
BspOI	GCTAGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	190
BssMI	GATC	2 cut(s)	55, 214
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	165, 349
BstKTI	GATC	2 cut(s)	58, 217
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	55, 214
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 357
BstV1I	GCAGC	2 cut(s)	318, 327
BstX2I	RGATCY	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	214
BstZI	CGGCCG	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	354
BtrI	CACGTC	1 cut(s)	195
Cac8I	GCNNGC	2 cut(s)	165, 349
CciI	TCATGA	1 cut(s)	325
CciNI	GCGGCCGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	2 cut(s)	292, 326
CviJI	RGCY	8 cut(s)	18, 137, 163, 167, 271, 331, 354, 360
CviKI_1	RGCY	8 cut(s)	18, 137, 163, 167, 271, 331, 354, 360
CviQI	GTAC	1 cut(s)	81
DpnI	GATC	2 cut(s)	57, 216
DpnII	GATC	2 cut(s)	55, 214
EaeI	YGGCCR	1 cut(s)	352
EagI	CGGCCG	1 cut(s)	352
EclXI	CGGCCG	1 cut(s)	352
Eco52I	CGGCCG	1 cut(s)	352
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	2 cut(s)	295, 329
FaiI	YATR	5 cut(s)	158, 209, 239, 293, 327
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	2 cut(s)	291, 325
Fnu4HI	GCNGC	5 cut(s)	316, 332, 352, 355, 358
Fsp4HI	GCNGC	5 cut(s)	316, 332, 352, 355, 358
FspBI	CTAG	2 cut(s)	164, 361
GluI	GCNGC	5 cut(s)	316, 332, 352, 355, 358
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	295, 329
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	278, 286
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	244, 283
Hpy188III	TCNNGA	2 cut(s)	74, 326
HpyAV	CCTTC	2 cut(s)	218, 289
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 357
HpySE526I	ACGT	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	295, 329
Kzo9I	GATC	2 cut(s)	55, 214
LpnPI	CCDG	3 cut(s)	105, 153, 333
Lsp1109I	GCAGC	2 cut(s)	318, 327
MaeI	CTAG	2 cut(s)	164, 361
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	57, 216
MboI	GATC	2 cut(s)	55, 214
MboII	GAAGA	1 cut(s)	65
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	2 cut(s)	245, 340
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	24, 357
NdeII	GATC	2 cut(s)	55, 214
NheI	GCTAGC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	295, 329
NlaIV	GGNNCC	2 cut(s)	9, 124
NmuCI	GTSAC	1 cut(s)	190
NotI	GCGGCCGC	1 cut(s)	352
PagI	TCATGA	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	5 cut(s)	317, 333, 353, 356, 359
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	9, 124
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SatI	GCNGC	5 cut(s)	316, 332, 352, 355, 358
Sau3AI	GATC	2 cut(s)	55, 214
SchI	GAGTC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	178
SmoI	CTYRAG	1 cut(s)	178
Sse9I	AATT	2 cut(s)	245, 340
SsiI	CCGC	2 cut(s)	351, 355
SspMI	CTAG	2 cut(s)	164, 361
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	197
TasI	AATT	2 cut(s)	245, 340
TauI	GCSGC	2 cut(s)	354, 357
TfiI	GAWTC	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	3 cut(s)	315, 331, 357
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	4 cut(s)	57, 196, 237, 308
XapI	RAATTY	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	164, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.