Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

67856893 .. 67874499

Gene Structure 17607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG506300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGAAGAAGTCCTTGTTGTGTAAATGAGGGACTGAACAGAGGAGCTTGGACTGCTATTGAGGACCAAGTTCTCATAGACTACATCAACACCCATGGAGAAGGAAAATGGAGAAGAATTCCCAAAGAAGCTGCTAGCCACTATGATCGAGTATCTGAACGGAAGCGGTGGACTTTCAGGTCAACGACTCCGACGTCGTCTCCTCATGGAGACTTTTGTAGGCTTCTGTCTACTCTCTATCCTCATGATATCCTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

86

Amino Acids

9.92

Weight (kDa)

7.78

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 44	9.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	178, 193
AatII	GACGTC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	194
AluBI	AGCT	2 cut(s)	47, 131
AluI	AGCT	2 cut(s)	47, 131
Alw26I	GTCTC	2 cut(s)	204, 204
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	64
AsuNHI	GCTAGC	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	204, 204
BfaI	CTAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmtI	GCTAGC	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
BseDI	CCNNGG	1 cut(s)	94
BseRI	GAGGAG	2 cut(s)	57, 192
BseXI	GCAGC	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	45
BsmAI	GTCTC	2 cut(s)	204, 204
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	136
BstDSI	CCRYGG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	2 cut(s)	204, 204
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	136
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	3 cut(s)	95, 206, 245
CviJI	RGCY	4 cut(s)	47, 131, 138, 223
CviKI_1	RGCY	4 cut(s)	47, 131, 138, 223
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DrdI	GACNNNNNNGTC	2 cut(s)	178, 193
DseDI	GACNNNNNNGTC	2 cut(s)	178, 193
Eco130I	CCWWGG	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	3 cut(s)	98, 209, 248
FaiI	YATR	5 cut(s)	77, 96, 144, 207, 246
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	3 cut(s)	94, 205, 244
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	98, 209, 248
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	187
Hpy166II	GTNNAC	3 cut(s)	171, 183, 231
Hpy188I	TCNGA	2 cut(s)	157, 192
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	3 cut(s)	171, 183, 231
Hpy99I	CGWCG	2 cut(s)	196, 199
HpyAV	CCTTC	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	98, 209, 248
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	1 cut(s)	163
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	1 cut(s)	194
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	18, 126
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	22, 35, 55, 213, 252
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	1 cut(s)	145
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	3 cut(s)	98, 209, 248
PagI	TCATGA	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	196
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	181
SetI	ASST	4 cut(s)	49, 133, 182, 197
SgeI	CNNG	9 cut(s)	27, 60, 80, 107, 147, 161, 190, 218, 257
SinI	GGWCC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	1 cut(s)	148
TasI	AATT	1 cut(s)	117
TseI	GCWGC	1 cut(s)	131
TspGWI	ACGGA	1 cut(s)	175
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.