Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

49451841 .. 49452410

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG296800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAATTTGCTCCTTTGGAAAAAGAAAAAAGAAAAAAAAGGATGTTCATGTCAACTTATGTGTATGATCCCTAATATTTCACTTGGATATAGTAATGCTACTTCCCCTTCCCGGTATCCATTTGTCTTATTGTTTATAGTTGAGCTTTCCTGGGTTTCTCTCTGGGTAATTTGCAGTGTGATTTTTGTAACTCTCCCTTCTCTGCAGATTCAAAGAAATCTACAGTTACGAATTGAAGAACAAGGGAAGTACCTTCAAATGATGTTTGAAAAGCAATGCAAGTCAGGTGGTGACAAGCTGAATGCTTCATCATCCAGTTTGGACGATCCTTCTGCTCAGCCTTCAGAGGCAATGCAAGTTTCTCCTGATAAAAGTGAATTGGAGCCCTCCAAGGTGGAGCATGGTGAGACTGAAGTTGATGCTGTCAAATCCAAAGTTGCATCAGTAGAATGTGCTGAGGAGCGGATAGGGAAGCAAAAGTCACCCGAAACTGAGGCTCCCAAGGATTGTGAGCCGGATGTTTGTATGTCCAGTTCCCAACCTCCTAAGCGTCCCAAAATCAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

189

Amino Acids

21.13

Weight (kDa)

6.62

Isoelectric Point (pI)

65.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	68 - 94	1.1e-10	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	463
AciI	CCGC	1 cut(s)	463
AclWI	GGATC	2 cut(s)	61, 320
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	327, 432
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	4 cut(s)	212, 236, 257, 269
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	2 cut(s)	145, 298
AluI	AGCT	2 cut(s)	145, 298
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	2 cut(s)	61, 320
ApoI	RAATTY	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	3 cut(s)	302, 416, 474
BanII	GRGCYC	1 cut(s)	387
BarI	GAAGNNNNNNTAC	2 cut(s)	85, 117
BbvCI	CCTCAGC	1 cut(s)	456
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	401
BfmI	CTRYAG	2 cut(s)	203, 221
BfuI	GTATCC	1 cut(s)	126
BlpI	GCTNAGC	1 cut(s)	336
Bme1390I	CCNGG	2 cut(s)	112, 151
BmiI	GGNNCC	2 cut(s)	384, 498
BmrFI	CCNGG	2 cut(s)	112, 151
BmsI	GCATC	2 cut(s)	409, 449
Bpu10I	CCTNAGC	2 cut(s)	456, 546
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	150, 390, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	2 cut(s)	315, 531
Bse3DI	GCAATG	2 cut(s)	281, 357
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	150, 390, 501
BseGI	GGATG	3 cut(s)	47, 311, 523
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMI	GCAATG	2 cut(s)	281, 357
BseMII	CTCAG	3 cut(s)	350, 447, 483
BseNI	ACTGG	2 cut(s)	315, 531
BseRI	GAGGAG	1 cut(s)	473
BsiSI	CCGG	2 cut(s)	112, 515
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	537
BsmI	GAATGC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	66, 325
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	463
BspCNI	CTCAG	3 cut(s)	349, 448, 484
BspLI	GGNNCC	2 cut(s)	384, 498
BspMAI	CTGCAG	1 cut(s)	207
BspPI	GGATC	2 cut(s)	61, 320
BsrBI	CCGCTC	1 cut(s)	463
BsrDI	GCAATG	2 cut(s)	281, 357
BsrI	ACTGG	2 cut(s)	315, 531
BssECI	CCNNGG	3 cut(s)	150, 390, 501
BssMI	GATC	2 cut(s)	66, 325
BssT1I	CCWWGG	2 cut(s)	390, 501
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	225
BstDEI	CTNAG	4 cut(s)	336, 456, 492, 546
BstF5I	GGATG	3 cut(s)	47, 311, 523
BstKTI	GATC	2 cut(s)	69, 328
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	2 cut(s)	66, 325
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	2 cut(s)	110, 149
BstSFI	CTRYAG	2 cut(s)	203, 221
BsuI	GTATCC	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	47, 311, 523
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	181
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	250
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	2 cut(s)	48, 401
CviJI	RGCY	6 cut(s)	145, 298, 340, 385, 497, 514
CviKI_1	RGCY	6 cut(s)	145, 298, 340, 385, 497, 514
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	4 cut(s)	336, 456, 492, 546
DpnI	GATC	2 cut(s)	68, 327
DpnII	GATC	2 cut(s)	66, 325
Eco130I	CCWWGG	2 cut(s)	390, 501
Eco24I	GRGCYC	1 cut(s)	387
Eco57I	CTGAAG	2 cut(s)	327, 432
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	390, 501
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	390, 501
FaeI	CATG	2 cut(s)	51, 404
FaiI	YATR	7 cut(s)	49, 59, 65, 90, 137, 402, 527
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	2 cut(s)	47, 400
FokI	GGATG	3 cut(s)	54, 298, 530
FriOI	GRGCYC	1 cut(s)	387
HapII	CCGG	2 cut(s)	112, 515
HgaI	GACGC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	51, 404
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	2 cut(s)	112, 515
HphI	GGTGA	3 cut(s)	302, 416, 474
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	5 cut(s)	117, 207, 263, 339, 351
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4V	TGCA	5 cut(s)	174, 205, 279, 355, 440
HpyF3I	CTNAG	4 cut(s)	336, 456, 492, 546
Hsp92II	CATG	2 cut(s)	51, 404
Kzo9I	GATC	2 cut(s)	66, 325
LmnI	GCTCC	5 cut(s)	15, 382, 397, 460, 502
LpnPI	CCDG	9 cut(s)	125, 136, 148, 163, 270, 328, 378, 528, 544
LweI	GCATC	2 cut(s)	409, 449
MaeIII	GTNAC	4 cut(s)	187, 225, 290, 480
MalI	GATC	2 cut(s)	68, 327
MbiI	CCGCTC	1 cut(s)	463
MboI	GATC	2 cut(s)	66, 325
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	4 cut(s)	4, 168, 231, 377
MnlI	CCTC	5 cut(s)	340, 397, 451, 487, 552
MspI	CCGG	2 cut(s)	112, 515
MspR9I	CCNGG	2 cut(s)	112, 151
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	151
NciI	CCSGG	1 cut(s)	112
NdeII	GATC	2 cut(s)	66, 325
NlaIII	CATG	2 cut(s)	51, 404
NlaIV	GGNNCC	2 cut(s)	384, 498
NmuCI	GTSAC	2 cut(s)	290, 480
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	2 cut(s)	384, 498
PsrI	GAACNNNNNNTAC	2 cut(s)	517, 549
PstI	CTGCAG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
Sau3AI	GATC	2 cut(s)	66, 325
ScrFI	CCNGG	2 cut(s)	112, 151
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	6 cut(s)	147, 255, 289, 300, 396, 544
SfaNI	GCATC	2 cut(s)	409, 449
SfcI	CTRYAG	2 cut(s)	203, 221
Sse9I	AATT	4 cut(s)	4, 168, 231, 377
SsiI	CCGC	1 cut(s)	463
SspI	AATATT	1 cut(s)	76
StyD4I	CCNGG	2 cut(s)	110, 149
StyI	CCWWGG	2 cut(s)	390, 501
TaaI	ACNGT	1 cut(s)	225
TasI	AATT	4 cut(s)	4, 168, 231, 377
TfiI	GAWTC	1 cut(s)	208
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	290, 480
Tsp45I	GTSAC	2 cut(s)	290, 480
TspDTI	ATGAA	3 cut(s)	17, 36, 297
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.