Rh5CG279000
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
N/A
Physical Location & Seq
Forward (+)
30379530 .. 30380321
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG279000.1

Sequence Viewer

Length: 516 bp
ATGGCGGCCTCCAAGAAACTAATTATAACAAGGGATTGGCATGGAGTGAGGAGGAGCACCGGAAGTTTCTTGAGGGGATTGAAAAGCTGGGTAGGGGTGATTGGAGGGGCATCTCTAAACACTATGTTACTACAAGATCTCCAACCCAGATCGCCAGTCATGCCCAAAAATATTTTCTCAGATGTCAAAATAGTACCACCGCCAACACTTCAACCATCAACAACCTCGACTTCAACTTTGACCCCCACAAGAAAAGACGCCGAGGTCGGTAACGATCAACTTGTCTCCCCTCGTCAACTGATTGATATTAACACTAATAATCCCAATACTGAAGCATCTGTTAAGAATCCATATCAGTACTGCTGGCCAGCTGTTCATAATTCGACGCCTCTCCAAATTGATGTTAATTTGAAGAACTCATCGTCTCAGAGTGCAGTAGCAGCAGGAGGAGGAGGACTTGACTTAGAAGTACTTAAGCTTGCAGCAATCATAATGCCGTTGTGGTTAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

171

Amino Acids

18.5

Weight (kDa)

9.41

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AasI GACNNNNNNGTC 1 cut(s) 263
AciI CCGC 2 cut(s) 5, 200
AcoI YGGCCR 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 351
AcyI GRCGYC 2 cut(s) 258, 386
AfaI GTAC 3 cut(s) 195, 359, 471
AflII CTTAAG 1 cut(s) 473
AgsI TTSAA 4 cut(s) 82, 212, 234, 412
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 3 cut(s) 87, 371, 478
AluI AGCT 3 cut(s) 87, 371, 478
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 289, 429
AoxI GGCC 2 cut(s) 6, 365
ApeKI GCWGC 2 cut(s) 440, 482
ArsI GACNNNNNNTTYG 2 cut(s) 220, 252
AsuHPI GGTGA 1 cut(s) 109
BalI TGGCCA 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 452, 494
BccI CCATC 1 cut(s) 223
BceAI ACGGC 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 289, 429
BfrI CTTAAG 1 cut(s) 473
BglII AGATCT 1 cut(s) 136
BisI GCNGC 3 cut(s) 6, 441, 483
BlsI GCNGC 3 cut(s) 7, 442, 484
BmcAI AGTACT 2 cut(s) 359, 471
BmsI GCATC 2 cut(s) 119, 344
BpuEI CTTGAG 1 cut(s) 91
BsaHI GRCGYC 2 cut(s) 258, 386
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 59
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bse1I ACTGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 192, 440
BseNI ACTGG 1 cut(s) 155
BseRI GAGGAG 4 cut(s) 64, 67, 462, 465
BseXI GCAGC 2 cut(s) 452, 494
BseYI CCCAGC 1 cut(s) 87
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 2 cut(s) 8, 367
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 60
BsmAI GTCTC 2 cut(s) 289, 429
BsmBI CGTCTC 1 cut(s) 429
BsnI GGCC 2 cut(s) 8, 367
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 4 cut(s) 136, 149, 274, 508
BspACI CCGC 2 cut(s) 5, 200
BspANI GGCC 2 cut(s) 8, 367
BspCNI CTCAG 2 cut(s) 191, 439
BspTI CTTAAG 1 cut(s) 473
BsrI ACTGG 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 4 cut(s) 136, 149, 274, 508
BssNI GRCGYC 2 cut(s) 258, 386
BstACI GRCGYC 2 cut(s) 258, 386
BstAFI CTTAAG 1 cut(s) 473
BstC8I GCNNGC 3 cut(s) 365, 369, 480
BstDEI CTNAG 3 cut(s) 178, 426, 463
BstKTI GATC 4 cut(s) 139, 152, 277, 511
BstMAI GTCTC 2 cut(s) 289, 429
BstMBI GATC 4 cut(s) 136, 149, 274, 508
BstMWI GCNNNNNNNGC 2 cut(s) 160, 440
BstV1I GCAGC 2 cut(s) 452, 494
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 2 cut(s) 8, 367
Cac8I GCNNGC 3 cut(s) 365, 369, 480
CseI GACGC 2 cut(s) 266, 394
Csp6I GTAC 3 cut(s) 194, 358, 470
CviAII CATG 2 cut(s) 41, 160
CviJI RGCY 5 cut(s) 8, 87, 367, 371, 478
CviKI_1 RGCY 5 cut(s) 8, 87, 367, 371, 478
CviQI GTAC 3 cut(s) 194, 358, 470
DdeI CTNAG 3 cut(s) 178, 426, 463
DpnI GATC 4 cut(s) 138, 151, 276, 510
DpnII GATC 4 cut(s) 136, 149, 274, 508
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 351
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 2 cut(s) 44, 163
FaiI YATR 7 cut(s) 26, 42, 125, 161, 352, 378, 491
FatI CATG 2 cut(s) 40, 159
Fnu4HI GCNGC 3 cut(s) 6, 441, 483
Fsp4HI GCNGC 3 cut(s) 6, 441, 483
GluI GCNGC 3 cut(s) 6, 441, 483
GsaI CCCAGC 1 cut(s) 91
HaeIII GGCC 2 cut(s) 8, 367
HapII CCGG 1 cut(s) 60
HgaI GACGC 2 cut(s) 266, 394
Hin1I GRCGYC 2 cut(s) 258, 386
Hin1II CATG 2 cut(s) 44, 163
HincII GTYRAC 1 cut(s) 296
HindII GTYRAC 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 1 cut(s) 346
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 2 cut(s) 181, 429
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 296
Hpy99I CGWCG 1 cut(s) 388
HpyCH4V TGCA 2 cut(s) 434, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 440
HpyF3I CTNAG 3 cut(s) 178, 426, 463
Hsp92I GRCGYC 2 cut(s) 258, 386
Hsp92II CATG 2 cut(s) 44, 163
Kzo9I GATC 4 cut(s) 136, 149, 274, 508
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 7 cut(s) 73, 73, 160, 168, 349, 381, 429
Lsp1109I GCAGC 2 cut(s) 452, 494
LweI GCATC 2 cut(s) 119, 344
MaeIII GTNAC 2 cut(s) 126, 269
MalI GATC 4 cut(s) 138, 151, 276, 510
MboI GATC 4 cut(s) 136, 149, 274, 508
MboII GAAGA 1 cut(s) 424
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 367
MluCI AATT 4 cut(s) 21, 379, 396, 406
MluNI TGGCCA 1 cut(s) 367
MmeI TCCRAC 1 cut(s) 166
Mox20I TGGCCA 1 cut(s) 367
MscI TGGCCA 1 cut(s) 367
MseI TTAA 4 cut(s) 309, 342, 405, 474
Msp20I TGGCCA 1 cut(s) 367
MspA1I CMGCKG 1 cut(s) 371
MspCI CTTAAG 1 cut(s) 473
MspI CCGG 1 cut(s) 60
MwoI GCNNNNNNNGC 2 cut(s) 160, 440
NdeII GATC 4 cut(s) 136, 149, 274, 508
NlaIII CATG 2 cut(s) 44, 163
NmeAIII GCCGAG 1 cut(s) 286
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 3 cut(s) 7, 442, 484
PsiI TTATAA 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 87
PsuI RGATCY 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 3 cut(s) 195, 359, 471
RsaNI GTAC 3 cut(s) 194, 358, 470
SaqAI TTAA 4 cut(s) 309, 342, 405, 474
SatI GCNGC 3 cut(s) 6, 441, 483
Sau3AI GATC 4 cut(s) 136, 149, 274, 508
ScaI AGTACT 2 cut(s) 359, 471
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 89, 227, 267, 373, 480
SfaNI GCATC 2 cut(s) 119, 344
SmlI CTYRAG 2 cut(s) 70, 473
SmoI CTYRAG 2 cut(s) 70, 473
Sse9I AATT 4 cut(s) 21, 379, 396, 406
SsiI CCGC 2 cut(s) 5, 200
SspI AATATT 1 cut(s) 172
TaqI TCGA 2 cut(s) 227, 383
TasI AATT 4 cut(s) 21, 379, 396, 406
TatI WGTACW 2 cut(s) 357, 469
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 4 cut(s) 309, 342, 405, 474
Tru9I TTAA 4 cut(s) 309, 342, 405, 474
TseI GCWGC 2 cut(s) 440, 482
TspDTI ATGAA 1 cut(s) 365
Vha464I CTTAAG 1 cut(s) 473
ZrmI AGTACT 2 cut(s) 359, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.