Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13325276 .. 13329821

Gene Structure 4546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG147600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGTAAAACAAGAGCACAAAAGGCCAGAGTGAGCTTTGTGATACCCGCCATGGTCTTAGCAAAGCCAGAGCAAAAGAGCCAAGGAAAAAAAGTTCATTATTGGAACGAGTACCTATCAAAGTGTCAAACTTTTTTCACCTTGCCTCACCCTTTTAACTTTTACTCTTCTTCCAATAGTCTTGCAGCCGCGTCAACCGAGCTTGGAAGCTTGGGTCTTCAATCTCAAAAGGGTGCCATGGATATCCCTCTGCCTCTTAGTAAATTGGCTATGCATCTGGTTAATCACGACGACAAGGACAAGAAATATGTAGTTCTAGTAGCAACCGGAAGTTTCAATCCTCCTACTTACATGCATTTACGAATGTTGGAACTGGCGAGAGACGCAATGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCACCTGTTAATGGAGCATACAACAAGAGGGGACTTATATCTGCTGAACATCGTATACAGTTGTGTCATCTAGCCTGCAAAAGTTCAGAGTTTGTAATGGTTGATCCGTGGGAGGCAAGACAAAGTACCTTCCAACGAAGTTTAACAGTACTGTCTAGAGTCAAGGGTTTCTTGTCCGAGTCTGGGCTGATACCCAGTGAATCTCTGAAGTGCATGCTTGTTTGTGGTTCTGATCTACTCCACTCTTTTAGCATTCCTGGAGTTTGGATTCCAGACCAGGTATGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

238

Amino Acids

26.4

Weight (kDa)

9.05

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	108 - 225	1e-12	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	481
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	48, 189
AclWI	GGATC	1 cut(s)	524
AcsI	RAATTY	1 cut(s)	391
AcuI	CTGAAG	2 cut(s)	417, 653
AfaI	GTAC	3 cut(s)	113, 553, 576
AfiI	CCNNNNNNNGG	2 cut(s)	437, 609
AgsI	TTSAA	2 cut(s)	221, 337
AjnI	CCWGG	2 cut(s)	682, 702
AloI	GAACNNNNNNTCC	2 cut(s)	78, 110
AluBI	AGCT	3 cut(s)	36, 202, 210
AluI	AGCT	3 cut(s)	36, 202, 210
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	524
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	391
AsuHPI	GGTGA	3 cut(s)	130, 140, 420
BanI	GGYRCC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	684, 704
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	3 cut(s)	317, 497, 582
BisI	GCNGC	2 cut(s)	186, 189
BlsI	GCNGC	2 cut(s)	187, 190
BmcAI	AGTACT	1 cut(s)	576
Bme1390I	CCNGG	2 cut(s)	684, 704
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	684, 704
BmrI	ACTGGG	1 cut(s)	615
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	1 cut(s)	615
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	705
BsaJI	CCNNGG	4 cut(s)	51, 82, 237, 533
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	2 cut(s)	437, 609
Bse1I	ACTGG	2 cut(s)	378, 621
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	684, 704
BseDI	CCNNGG	4 cut(s)	51, 82, 237, 533
BseLI	CCNNNNNNNGG	2 cut(s)	437, 609
BseMI	GCAATG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	378, 621
BseXI	GCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	471
BslI	CCNNNNNNNGG	2 cut(s)	437, 609
BsmAI	GTCTC	1 cut(s)	375
BsmBI	CGTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	471
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	529, 658
Bsp19I	CCATGG	2 cut(s)	51, 237
BspACI	CCGC	2 cut(s)	48, 189
BspANI	GGCC	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	524
BspT107I	GGYRCC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	2 cut(s)	378, 621
BssECI	CCNNGG	4 cut(s)	51, 82, 237, 533
BssMI	GATC	2 cut(s)	529, 658
BssNAI	GTATAC	1 cut(s)	482
BssT1I	CCWWGG	3 cut(s)	51, 82, 237
Bst1107I	GTATAC	1 cut(s)	482
Bst2UI	CCWGG	2 cut(s)	684, 704
Bst4CI	ACNGT	3 cut(s)	486, 574, 579
Bst6I	CTCTTC	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	502, 641
BstDEI	CTNAG	2 cut(s)	58, 257
BstDSI	CCRYGG	3 cut(s)	51, 237, 533
BstFNI	CGCG	1 cut(s)	191
BstKTI	GATC	2 cut(s)	532, 661
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	2 cut(s)	529, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 383
BstNI	CCWGG	2 cut(s)	684, 704
BstNSI	RCATGY	2 cut(s)	355, 643
BstSCI	CCNGG	2 cut(s)	682, 702
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	209
BstZ17I	GTATAC	1 cut(s)	482
BsuRI	GGCC	1 cut(s)	26
BtgI	CCRYGG	3 cut(s)	51, 237, 533
BtsIMutI	CAGTG	1 cut(s)	628
Cac8I	GCNNGC	2 cut(s)	502, 641
CseI	GACGC	2 cut(s)	180, 392
CsiI	ACCWGGT	1 cut(s)	702
Csp6I	GTAC	3 cut(s)	112, 552, 575
CviAII	CATG	4 cut(s)	52, 238, 352, 640
CviQI	GTAC	3 cut(s)	112, 552, 575
DdeI	CTNAG	2 cut(s)	58, 257
DpnI	GATC	2 cut(s)	531, 660
DpnII	GATC	2 cut(s)	529, 658
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco130I	CCWWGG	3 cut(s)	51, 82, 237
Eco32I	GATATC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	417, 653
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	682, 702
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	3 cut(s)	51, 82, 237
EcoT22I	ATGCAT	2 cut(s)	276, 357
ErhI	CCWWGG	3 cut(s)	51, 82, 237
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	4 cut(s)	55, 241, 355, 643
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	471
FatI	CATG	4 cut(s)	51, 237, 351, 639
FauI	CCCGC	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	186, 189
Fsp4HI	GCNGC	2 cut(s)	186, 189
FspBI	CTAG	3 cut(s)	317, 497, 582
GluI	GCNGC	2 cut(s)	186, 189
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	2 cut(s)	180, 392
Hin1II	CATG	4 cut(s)	55, 241, 355, 643
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	4 cut(s)	585, 605, 626, 694
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	3 cut(s)	130, 140, 420
Hpy166II	GTNNAC	2 cut(s)	195, 482
Hpy188I	TCNGA	5 cut(s)	397, 514, 604, 633, 658
Hpy188III	TCNNGA	3 cut(s)	287, 582, 698
Hpy8I	GTNNAC	2 cut(s)	195, 482
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	392, 565
HpyCH4III	ACNGT	3 cut(s)	486, 574, 579
HpyCH4V	TGCA	5 cut(s)	185, 274, 355, 504, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 383
HpyF3I	CTNAG	2 cut(s)	58, 257
Hsp92II	CATG	4 cut(s)	55, 241, 355, 643
Kzo9I	GATC	2 cut(s)	529, 658
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	283
MabI	ACCWGGT	1 cut(s)	702
MaeI	CTAG	3 cut(s)	317, 497, 582
MalI	GATC	2 cut(s)	531, 660
MboI	GATC	2 cut(s)	529, 658
MboII	GAAGA	3 cut(s)	159, 162, 209
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	2 cut(s)	263, 391
MlyI	GAGTC	2 cut(s)	594, 614
MmeI	TCCRAC	2 cut(s)	348, 583
MnlI	CCTC	7 cut(s)	156, 258, 264, 351, 410, 447, 532
Mph1103I	ATGCAT	2 cut(s)	276, 357
MseI	TTAA	4 cut(s)	156, 282, 435, 569
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	684, 704
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	2 cut(s)	684, 704
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	23, 383
NcoI	CCATGG	2 cut(s)	51, 237
NdeII	GATC	2 cut(s)	529, 658
NlaIII	CATG	4 cut(s)	55, 241, 355, 643
NlaIV	GGNNCC	1 cut(s)	235
NsiI	ATGCAT	2 cut(s)	276, 357
NspI	RCATGY	2 cut(s)	355, 643
PaeI	GCATGC	1 cut(s)	643
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	626, 694
PfoI	TCCNGGA	1 cut(s)	682
PkrI	GCNGC	2 cut(s)	187, 190
PleI	GAGTC	2 cut(s)	593, 613
PpsI	GAGTC	2 cut(s)	593, 613
Psp6I	CCWGG	2 cut(s)	682, 702
PspGI	CCWGG	2 cut(s)	682, 702
PspN4I	GGNNCC	1 cut(s)	235
PsrI	GAACNNNNNNTAC	2 cut(s)	465, 497
RsaI	GTAC	3 cut(s)	113, 553, 576
RsaNI	GTAC	3 cut(s)	112, 552, 575
SaqAI	TTAA	4 cut(s)	156, 282, 435, 569
SatI	GCNGC	2 cut(s)	186, 189
Sau3AI	GATC	2 cut(s)	529, 658
ScaI	AGTACT	1 cut(s)	576
SchI	GAGTC	2 cut(s)	594, 614
ScrFI	CCNGG	2 cut(s)	684, 704
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	9 cut(s)	38, 117, 143, 204, 212, 421, 433, 557, 708
SexAI	ACCWGGT	1 cut(s)	702
SfaNI	GCATC	1 cut(s)	283
SphI	GCATGC	1 cut(s)	643
Sse9I	AATT	2 cut(s)	263, 391
SsiI	CCGC	2 cut(s)	48, 189
SspMI	CTAG	3 cut(s)	317, 497, 582
StyD4I	CCNGG	2 cut(s)	682, 702
StyI	CCWWGG	3 cut(s)	51, 82, 237
TaaI	ACNGT	3 cut(s)	486, 574, 579
TasI	AATT	2 cut(s)	263, 391
TatI	WGTACW	1 cut(s)	574
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	626, 694
Tru1I	TTAA	4 cut(s)	156, 282, 435, 569
Tru9I	TTAA	4 cut(s)	156, 282, 435, 569
TscAI	CASTG	1 cut(s)	628
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	86, 404
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	628
XapI	RAATTY	1 cut(s)	391
XbaI	TCTAGA	1 cut(s)	581
XceI	RCATGY	2 cut(s)	355, 643
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	3 cut(s)	317, 497, 582
ZrmI	AGTACT	1 cut(s)	576
Zsp2I	ATGCAT	2 cut(s)	276, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.