Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

34214471 .. 34225346

Gene Structure 10876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG272600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGGAGAAGCAGCACTTACTATGATAAGAATGATGGACTGAAGAAAGGAGCCTGGGCTGCAAGTGAAGACCAGATTGTCAAAGACTACGTCAAAAAACACGGCATCGGAAAATGGGGCAAACTAACTAGGGAAACAGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTTAGGTGGATGAACTATCTGAGGCCTGATATCATCAGAGGCTACATTAAAGAAGATGAAGAAGAGCTCATCATCAGGCTCCACAAACTCCTGGGAAACAGATGGTCATTGATAGCTGGAAGGATACCAGGGCGAACTGACAATGAAATCAAAAACTACTGGAATTCCACCTTAAAGAGGAAGCTGGAACAAGAAAATCACTTAGAAGTGTTTAAAGATGAGGAGATCAAGGAGGACTTGCCATCCTCTGTTGCTGCTGCAGATGAGGAAAACCCACGTTTGACCAAAAACAATGTCGTTGAAGACGAAGATCATCATCGTCAGCATTACGATGTTGACGTTGGAGTTGGAGTGGAAGCAACTAATAATAACGGTGTAATTGATTTCTCTACGCGTGGAGCCAGGCTCAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

194

Amino Acids

22.52

Weight (kDa)

8.52

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	5.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	71 - 113	1.7e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 131	1.9e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AccII	CGCG	1 cut(s)	562
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	2 cut(s)	62, 164
AfiI	CCNNNNNNNGG	1 cut(s)	345
AflIII	ACRYGT	1 cut(s)	560
AgsI	TTSAA	1 cut(s)	470
AjnI	CCWGG	4 cut(s)	53, 258, 295, 569
AluBI	AGCT	3 cut(s)	235, 284, 352
AluI	AGCT	3 cut(s)	235, 284, 352
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	160
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	4 cut(s)	12, 59, 422, 425
ApoI	RAATTY	1 cut(s)	331
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 447, 479
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	2 cut(s)	75, 477
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	24, 46, 409, 412
BccI	CCATC	3 cut(s)	29, 264, 418
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	4 cut(s)	55, 260, 297, 571
BciVI	GTATCC	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	4 cut(s)	13, 60, 423, 426
BlsI	GCNGC	4 cut(s)	14, 61, 424, 427
Bme1390I	CCNGG	4 cut(s)	55, 260, 297, 571
BmiI	GGNNCC	3 cut(s)	52, 248, 568
BmrFI	CCNGG	4 cut(s)	55, 260, 297, 571
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	75, 477
BplI	GAGNNNNNCTC	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	483
BsaJI	CCNNGG	3 cut(s)	54, 259, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	4 cut(s)	55, 260, 297, 571
BseDI	CCNNGG	3 cut(s)	54, 259, 296
BseGI	GGATG	2 cut(s)	183, 410
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	2 cut(s)	19, 404
BseXI	GCAGC	4 cut(s)	24, 46, 409, 412
Bsh1236I	CGCG	1 cut(s)	562
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	393, 478
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	562
BspLI	GGNNCC	3 cut(s)	52, 248, 568
BspMAI	CTGCAG	1 cut(s)	430
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	54, 259, 296
BssMI	GATC	2 cut(s)	393, 478
Bst2UI	CCWGG	4 cut(s)	55, 260, 297, 571
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	3 cut(s)	140, 152, 225
BstDEI	CTNAG	3 cut(s)	170, 188, 370
BstENI	CCTNNNNNAGG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	183, 410
BstFNI	CGCG	1 cut(s)	562
BstKTI	GATC	2 cut(s)	396, 481
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	2 cut(s)	393, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	4 cut(s)	55, 260, 297, 571
BstSCI	CCNGG	4 cut(s)	53, 258, 295, 569
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	562
BstV1I	GCAGC	4 cut(s)	24, 46, 409, 412
BstV2I	GAAGAC	2 cut(s)	75, 477
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	183, 410
DdeI	CTNAG	3 cut(s)	170, 188, 370
DpnI	GATC	2 cut(s)	395, 480
DpnII	GATC	2 cut(s)	393, 478
DraI	TTTAAA	1 cut(s)	382
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eam1104I	CTCTTC	3 cut(s)	140, 152, 225
EarI	CTCTTC	3 cut(s)	140, 152, 225
Ecl136II	GAGCTC	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	2 cut(s)	62, 164
EcoICRI	GAGCTC	1 cut(s)	235
EcoNI	CCTNNNNNAGG	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	4 cut(s)	53, 258, 295, 569
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	237
FaiI	YATR	1 cut(s)	24
FalI	AAGNNNNNCTT	3 cut(s)	33, 389, 421
Fnu4HI	GCNGC	4 cut(s)	13, 60, 423, 426
FokI	GGATG	2 cut(s)	190, 397
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	13, 60, 423, 426
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	4 cut(s)	13, 60, 423, 426
HaeIII	GGCC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	4 cut(s)	110, 144, 189, 206
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	3 cut(s)	90, 445, 507
HpyCH4V	TGCA	2 cut(s)	62, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	3 cut(s)	170, 188, 370
HpySE526I	ACGT	3 cut(s)	90, 445, 507
Kzo9I	GATC	2 cut(s)	393, 478
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	3 cut(s)	50, 252, 566
Lsp1109I	GCAGC	4 cut(s)	24, 46, 409, 412
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	3 cut(s)	90, 445, 507
MalI	GATC	2 cut(s)	395, 480
MboI	GATC	2 cut(s)	393, 478
MboII	GAAGA	9 cut(s)	55, 80, 157, 169, 233, 239, 242, 482, 488
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	331, 546
MluI	ACGCGT	1 cut(s)	560
MmeI	TCCRAC	2 cut(s)	490, 496
MnlI	CCTC	7 cut(s)	183, 200, 339, 382, 394, 424, 427
MseI	TTAA	3 cut(s)	216, 341, 381
MslI	CAYNNNNRTG	1 cut(s)	498
MspR9I	CCNGG	4 cut(s)	55, 260, 297, 571
MvaI	CCWGG	4 cut(s)	55, 260, 297, 571
MvnI	CGCG	1 cut(s)	562
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	2 cut(s)	393, 478
NlaIV	GGNNCC	3 cut(s)	52, 248, 568
PceI	AGGCCT	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	2 cut(s)	471, 504
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	14, 61, 424, 427
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	4 cut(s)	53, 258, 295, 569
PspGI	CCWGG	4 cut(s)	53, 258, 295, 569
PspN4I	GGNNCC	3 cut(s)	52, 248, 568
PstI	CTGCAG	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	498
SacI	GAGCTC	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	216, 341, 381
SatI	GCNGC	4 cut(s)	13, 60, 423, 426
Sau3AI	GATC	2 cut(s)	393, 478
ScrFI	CCNGG	4 cut(s)	55, 260, 297, 571
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	9 cut(s)	93, 142, 176, 237, 286, 341, 354, 448, 510
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	498
Sse9I	AATT	2 cut(s)	331, 546
SseBI	AGGCCT	1 cut(s)	193
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	4 cut(s)	53, 258, 295, 569
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	3 cut(s)	93, 448, 510
TasI	AATT	2 cut(s)	331, 546
Tru1I	TTAA	3 cut(s)	216, 341, 381
Tru9I	TTAA	3 cut(s)	216, 341, 381
TseI	GCWGC	4 cut(s)	12, 59, 422, 425
TspDTI	ATGAA	3 cut(s)	194, 240, 327
Tth111I	GACNNNGTC	1 cut(s)	89
XagI	CCTNNNNNAGG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	331
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.