Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13469454 .. 13473847

Gene Structure 4394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG135700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGTCTTAGCAAAGCCAGAGCAAAAGAGCATAGGAAAAAAAGTTCATTATTGGAACGAGTACCTATCAAAGTGTCAAACTTTTTTCACCTTGCCTCACCCCTTTAACTTTTACTCTTCTTCCAATAGTCTTGCTGCCGCGTCTACCGAGCTTGGAGCTTGGAGCTTGGATAGCATCGCCGGGAGGATCAGAAGCTCAATCAGGTCCACGTGGCTAAAAGGAGAGACCTTTAGCTCTTCAATCTCAAAAGGGGACAAGAAATATGTAGTTCTAGTAGCAACCGGAAGTTTCAATCCTCCTACTTACATGCATTTACGAATGTTGGAACTGGCGAGAGACGCATTGAATTCTGAAGGCTTTTGTGTGATTGGAGGTTATATTTCACCTGTTAATGGTGCATACAACAAGAGGGGACTTATATCTGCTGAACATCGTATACAGTTGTGTCATCTAGCCTGCAAAAGTTCAGAGTTTGTAATGGTTGATCCGTGGGAGGCAAGACAAAGTACCTTCCAACGAAGTTTAACAGTACTGTCTAGAGTCAAGGGTTTCTTGTCTGAGTCTGGGCTGATACCCAGTGAATCCCTGAAGTGCATGCTTGTTTGTGGTTCTGATCTACTCCACTCTTTTAGCATTCCTGGAGTTTGGATTCCAGACCAGGTCAGGGGCATATGTAGAGATTATGGTGTGGTTTGCATTCGCAGGGAGGGACAAGATGTTGACAAGATAATGTCAAATGATGATATTTTGAGGGAGAATAGGGGTAACATAAGAACTGTGGATGAGCTTGTACCAAACCAAATAAGTTCAACAAGAGTAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

274

Amino Acids

30.62

Weight (kDa)

9.0

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	93 - 274	6.2e-16	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	143, 436
AccII	CGCG	1 cut(s)	140
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	2 cut(s)	194, 479
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	372, 608
AcvI	CACGTG	1 cut(s)	210
AfaI	GTAC	4 cut(s)	62, 508, 531, 792
AfiI	CCNNNNNNNGG	2 cut(s)	392, 664
AgsI	TTSAA	4 cut(s)	240, 292, 346, 810
AjnI	CCWGG	2 cut(s)	637, 657
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
AluBI	AGCT	6 cut(s)	151, 158, 165, 195, 234, 787
AluI	AGCT	6 cut(s)	151, 158, 165, 195, 234, 787
Alw26I	GTCTC	2 cut(s)	218, 330
AlwI	GGATC	2 cut(s)	194, 479
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	79, 89, 375
AvaII	GGWCC	1 cut(s)	204
BbrPI	CACGTG	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	639, 659
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	218, 330
BfaI	CTAG	3 cut(s)	272, 452, 537
BisI	GCNGC	2 cut(s)	135, 138
BlsI	GCNGC	2 cut(s)	136, 139
BmcAI	AGTACT	1 cut(s)	531
Bme1390I	CCNGG	3 cut(s)	181, 639, 659
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	3 cut(s)	181, 639, 659
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	570
BpmI	CTGGAG	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	181
BsaAI	YACGTR	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	488
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 664
Bse1I	ACTGG	2 cut(s)	333, 576
BseBI	CCWGG	2 cut(s)	639, 659
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	1 cut(s)	787
BseLI	CCNNNNNNNGG	2 cut(s)	392, 664
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	2 cut(s)	333, 576
BseXI	GCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	180, 282
BslFI	GGGAC	3 cut(s)	266, 426, 723
BslI	CCNNNNNNNGG	2 cut(s)	392, 664
BsmAI	GTCTC	2 cut(s)	218, 330
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	3 cut(s)	266, 426, 723
BsmI	GAATGC	2 cut(s)	633, 696
Bso31I	GGTCTC	1 cut(s)	218
Bsp143I	GATC	3 cut(s)	186, 484, 613
BspACI	CCGC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	140
BspPI	GGATC	2 cut(s)	194, 479
BspQI	GCTCTTC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	218
BsrI	ACTGG	2 cut(s)	333, 576
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	3 cut(s)	186, 484, 613
BssNAI	GTATAC	1 cut(s)	437
Bst1107I	GTATAC	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	639, 659
Bst4CI	ACNGT	4 cut(s)	441, 529, 534, 778
Bst6I	CTCTTC	2 cut(s)	121, 241
BstBAI	YACGTR	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	457, 596
BstDEI	CTNAG	2 cut(s)	7, 558
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	787
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	3 cut(s)	189, 487, 616
BstMAI	GTCTC	2 cut(s)	218, 330
BstMBI	GATC	3 cut(s)	186, 484, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 338
BstNI	CCWGG	2 cut(s)	639, 659
BstNSI	RCATGY	2 cut(s)	310, 598
BstSCI	CCNGG	3 cut(s)	179, 637, 657
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	121
BstZ17I	GTATAC	1 cut(s)	437
BtgI	CCRYGG	1 cut(s)	488
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	787
BtsIMutI	CAGTG	1 cut(s)	583
Cac8I	GCNNGC	2 cut(s)	457, 596
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	2 cut(s)	129, 347
CsiI	ACCWGGT	1 cut(s)	657
Csp6I	GTAC	4 cut(s)	61, 507, 530, 791
CviAII	CATG	2 cut(s)	307, 595
CviQI	GTAC	4 cut(s)	61, 507, 530, 791
DdeI	CTNAG	2 cut(s)	7, 558
DpnI	GATC	3 cut(s)	188, 486, 615
DpnII	GATC	3 cut(s)	186, 484, 613
Eam1104I	CTCTTC	2 cut(s)	121, 241
EarI	CTCTTC	2 cut(s)	121, 241
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	2 cut(s)	372, 608
Eco72I	CACGTG	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	637, 657
EcoT22I	ATGCAT	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	2 cut(s)	310, 598
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	3 cut(s)	266, 426, 723
FatI	CATG	2 cut(s)	306, 594
FauNDI	CATATG	1 cut(s)	671
FblI	GTMKAC	2 cut(s)	143, 436
Fnu4HI	GCNGC	2 cut(s)	135, 138
FokI	GGATG	1 cut(s)	794
Fsp4HI	GCNGC	2 cut(s)	135, 138
FspBI	CTAG	3 cut(s)	272, 452, 537
GluI	GCNGC	2 cut(s)	135, 138
GsuI	CTGGAG	1 cut(s)	660
HapII	CCGG	2 cut(s)	180, 282
HgaI	GACGC	2 cut(s)	129, 347
Hin1II	CATG	2 cut(s)	310, 598
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	4 cut(s)	540, 560, 581, 649
HpaII	CCGG	2 cut(s)	180, 282
HphI	GGTGA	3 cut(s)	79, 89, 375
Hpy166II	GTNNAC	4 cut(s)	144, 207, 437, 721
Hpy188I	TCNGA	5 cut(s)	191, 352, 469, 559, 613
Hpy188III	TCNNGA	2 cut(s)	537, 653
Hpy8I	GTNNAC	4 cut(s)	144, 207, 437, 721
HpyAV	CCTTC	2 cut(s)	347, 520
HpyCH4III	ACNGT	4 cut(s)	441, 529, 534, 778
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	5 cut(s)	310, 398, 459, 594, 696
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 338
HpyF3I	CTNAG	2 cut(s)	7, 558
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	310, 598
Kzo9I	GATC	3 cut(s)	186, 484, 613
LguI	GCTCTTC	1 cut(s)	241
LmnI	GCTCC	2 cut(s)	155, 162
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	183
MabI	ACCWGGT	1 cut(s)	657
MaeI	CTAG	3 cut(s)	272, 452, 537
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	764
MalI	GATC	3 cut(s)	188, 486, 615
MboI	GATC	3 cut(s)	186, 484, 613
MboII	GAAGA	3 cut(s)	108, 111, 228
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	2 cut(s)	549, 569
MmeI	TCCRAC	2 cut(s)	303, 538
MnlI	CCTC	8 cut(s)	105, 177, 306, 365, 402, 487, 700, 744
Mph1103I	ATGCAT	1 cut(s)	312
MseI	TTAA	3 cut(s)	105, 390, 524
MspI	CCGG	2 cut(s)	180, 282
MspR9I	CCNGG	3 cut(s)	181, 639, 659
Mva1269I	GAATGC	2 cut(s)	633, 696
MvaI	CCWGG	2 cut(s)	639, 659
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	171, 338
NciI	CCSGG	1 cut(s)	181
NdeI	CATATG	1 cut(s)	671
NdeII	GATC	3 cut(s)	186, 484, 613
NlaIII	CATG	2 cut(s)	310, 598
NsiI	ATGCAT	1 cut(s)	312
NspI	RCATGY	2 cut(s)	310, 598
PaeI	GCATGC	1 cut(s)	598
PciSI	GCTCTTC	1 cut(s)	241
PctI	GAATGC	2 cut(s)	633, 696
PfeI	GAWTC	2 cut(s)	581, 649
PflFI	GACNNNGTC	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	2 cut(s)	136, 139
PleI	GAGTC	2 cut(s)	548, 568
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
PpsI	GAGTC	2 cut(s)	548, 568
Ppu21I	YACGTR	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	637, 657
PspCI	CACGTG	1 cut(s)	210
PspGI	CCWGG	2 cut(s)	637, 657
PspPI	GGNCC	1 cut(s)	204
PsrI	GAACNNNNNNTAC	2 cut(s)	420, 452
PsyI	GACNNNGTC	1 cut(s)	659
RsaI	GTAC	4 cut(s)	62, 508, 531, 792
RsaNI	GTAC	4 cut(s)	61, 507, 530, 791
SapI	GCTCTTC	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	105, 390, 524
SatI	GCNGC	2 cut(s)	135, 138
Sau3AI	GATC	3 cut(s)	186, 484, 613
Sau96I	GGNCC	1 cut(s)	204
ScaI	AGTACT	1 cut(s)	531
SchI	GAGTC	2 cut(s)	549, 569
ScrFI	CCNGG	3 cut(s)	181, 639, 659
SexAI	ACCWGGT	1 cut(s)	657
SfaNI	GCATC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	204
SphI	GCATGC	1 cut(s)	598
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	3 cut(s)	272, 452, 537
StyD4I	CCNGG	3 cut(s)	179, 637, 657
TaaI	ACNGT	4 cut(s)	441, 529, 534, 778
TaiI	ACGT	1 cut(s)	212
TasI	AATT	1 cut(s)	346
TatI	WGTACW	1 cut(s)	529
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	581, 649
Tru1I	TTAA	3 cut(s)	105, 390, 524
Tru9I	TTAA	3 cut(s)	105, 390, 524
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	1 cut(s)	583
Tth111I	GACNNNGTC	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	346
XbaI	TCTAGA	1 cut(s)	536
XceI	RCATGY	2 cut(s)	310, 598
XmiI	GTMKAC	2 cut(s)	143, 436
XspI	CTAG	3 cut(s)	272, 452, 537
ZrmI	AGTACT	1 cut(s)	531
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.