Rh5AG447400
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
N/A
Physical Location & Seq
Reverse (-)
76924553 .. 76929134
4582 bp
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UTR
Exon/CDS
Intron
Rh5AG447400.1

Sequence Viewer

Length: 171 bp
ATGGAGCAAATCGTCGGCAATTCGCTTCCCGCGAAGGCCACCTCTGATGATGACAGAGGCATTACTTCCTCCGGTGCCACGCCTCAGAAATCAAAGAGGCCTCAGAAAATCGAAAGCAGAAGAAGCGCTTTCGCTAATAGACTGTTGTTTGAATTGAGGAGGCTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

56

Amino Acids

6.23

Weight (kDa)

10.4

Isoelectric Point (pI)

74.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 32
AciI CCGC 1 cut(s) 30
AfeI AGCGCT 1 cut(s) 127
AgsI TTSAA 1 cut(s) 152
Aor51HI AGCGCT 1 cut(s) 127
AoxI GGCC 2 cut(s) 36, 98
AspLEI GCGC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 76
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 1 cut(s) 151
BseMII CTCAG 2 cut(s) 98, 116
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 38, 100
BshNI GGYRCC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 72
BsnI GGCC 2 cut(s) 38, 100
BspACI CCGC 1 cut(s) 30
BspANI GGCC 2 cut(s) 38, 100
BspCNI CTCAG 2 cut(s) 97, 115
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 84, 102
BstFNI CGCG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstUI CGCG 1 cut(s) 32
BsuRI GGCC 2 cut(s) 38, 100
CfoI GCGC 1 cut(s) 128
CviJI RGCY 3 cut(s) 38, 100, 163
CviKI_1 RGCY 3 cut(s) 38, 100, 163
DdeI CTNAG 2 cut(s) 84, 102
Eco147I AGGCCT 1 cut(s) 100
Eco47III AGCGCT 1 cut(s) 127
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FauI CCCGC 1 cut(s) 37
GlaI GCGC 1 cut(s) 127
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 2 cut(s) 38, 100
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 128
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HpaII CCGG 1 cut(s) 72
Hpy188I TCNGA 3 cut(s) 46, 87, 105
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 2 cut(s) 84, 102
HspAI GCGC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 1 cut(s) 85
MboII GAAGA 1 cut(s) 132
MluCI AATT 2 cut(s) 19, 152
MnlI CCTC 8 cut(s) 50, 52, 79, 90, 93, 111, 150, 153
MspI CCGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 123
NlaIV GGNNCC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 100
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 76
SetI ASST 1 cut(s) 44
SgeI CNNG 4 cut(s) 41, 43, 84, 91
Sse9I AATT 2 cut(s) 19, 152
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 1 cut(s) 30
StuI AGGCCT 1 cut(s) 100
TaaI ACNGT 1 cut(s) 144
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 19, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.