Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

48873189 .. 48873809

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG268500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGATGTCAAACCAGGAAGGGTTTCGGACATCATTAGAAACAGTTCTGAAGAAGACGAAGATGCTATGATGATGGACCTGAGAAGAGGGCCATGGACGGTTGAGGAAGACGTTGCTCTCATGAATTACATTGCTAACCACGGCGAAGGTCGCTGGAACTCCCTTGCTCGCTGTGCAGTGAAAATTGCCAAAGTGCCAATCAAGTTCTTCTTCCTTCCCAGTTCTCTAACATTTTATCAGTTCTCCTTTATTGGCTTCCATGAAAAGGATCAATTAGATGGAGTGAAAAGCTTCATCTTGCTTGAAATAGAAGGGGGTGTCAAAAATTATTTTAAACGGTTGATTTGGAGGAGGATATGCTTGATTATTCATGATGATGATGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902074 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

129

Amino Acids

14.93

Weight (kDa)

5.6

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	29 - 58	1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
AlwI	GGATC	1 cut(s)	276
AoxI	GGCC	1 cut(s)	89
Asp700I	GAANNNNTTC	3 cut(s)	22, 43, 290
AspS9I	GGNCC	2 cut(s)	76, 89
AvaII	GGWCC	1 cut(s)	76
BbsI	GAAGAC	2 cut(s)	60, 114
BccI	CCATC	3 cut(s)	67, 272, 374
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 89
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	213
BpiI	GAAGAC	2 cut(s)	60, 114
BsaJI	CCNNGG	2 cut(s)	92, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	92, 139
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	268
Bsp19I	CCATGG	1 cut(s)	92
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	72
BspHI	TCATGA	2 cut(s)	120, 370
BspPI	GGATC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	219
BssECI	CCNNGG	2 cut(s)	92, 139
BssMI	GATC	1 cut(s)	268
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	3 cut(s)	44, 100, 339
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	2 cut(s)	92, 139
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 173
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstV2I	GAAGAC	2 cut(s)	60, 114
BsuRI	GGCC	1 cut(s)	91
BtgI	CCRYGG	2 cut(s)	92, 139
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	169
CciI	TCATGA	2 cut(s)	120, 370
Cfr13I	GGNCC	2 cut(s)	76, 89
CviAII	CATG	5 cut(s)	93, 121, 260, 371, 387
CviJI	RGCY	3 cut(s)	91, 255, 291
CviKI_1	RGCY	3 cut(s)	91, 255, 291
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DraI	TTTAAA	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	5 cut(s)	96, 124, 263, 374, 390
FaiI	YATR	7 cut(s)	68, 94, 122, 261, 358, 372, 388
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	5 cut(s)	92, 120, 259, 370, 386
FokI	GGATG	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	91
Hin1II	CATG	5 cut(s)	96, 124, 263, 374, 390
HindIII	AAGCTT	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	28, 49
Hpy188III	TCNNGA	2 cut(s)	121, 371
HpyAV	CCTTC	4 cut(s)	12, 140, 224, 305
HpyCH4III	ACNGT	3 cut(s)	44, 100, 339
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	176, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 173
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	5 cut(s)	96, 124, 263, 374, 390
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	4 cut(s)	27, 92, 139, 232
LweI	GCATC	1 cut(s)	52
MaeII	ACGT	1 cut(s)	111
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	7 cut(s)	62, 65, 71, 96, 119, 199, 202
MluCI	AATT	4 cut(s)	124, 183, 272, 325
MnlI	CCTC	4 cut(s)	80, 97, 342, 345
MroXI	GAANNNNTTC	3 cut(s)	22, 43, 290
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	150, 173
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	5 cut(s)	96, 124, 263, 374, 390
PagI	TCATGA	2 cut(s)	120, 370
PdmI	GAANNNNTTC	3 cut(s)	22, 43, 290
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	76, 89
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	76, 89
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	4 cut(s)	81, 114, 151, 293
SfaNI	GCATC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	4 cut(s)	124, 183, 272, 325
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	3 cut(s)	44, 100, 339
TaiI	ACGT	1 cut(s)	114
TasI	AATT	4 cut(s)	124, 183, 272, 325
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	1 cut(s)	183
TspDTI	ATGAA	4 cut(s)	137, 276, 283, 359
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	76
XmnI	GAANNNNTTC	3 cut(s)	22, 43, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.