Rh3BG313000
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
N/A
Physical Location & Seq
Reverse (-)
31808497 .. 31808850
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG313000.1

Sequence Viewer

Length: 354 bp
ATGGAGGAATTGGAGGGCGAGTCTGGTAAGTCGGGCCACACGGCCCGTAAAGGTGAGGGGAATTCGAGTTCTAGGTTTTTAGCTAATTTGGATGAATTTGTTGATGTACGGAGTGGTGGTGGTGATGCTGGTTTCCCTGTGAAATCATTAGGTCATAGGAATTTGGCGCCTTTGTTTAATCCTAAGATGAAGTTGAAGAAGAATGAAAGCTCAGGGTATCTTCGAAAATTCGGAGGAGTGGATTCTAGTGGTGTTAAAGATTTGGTAGGGGGTTCGGGTTTGTTGAGGAGTGTTAGAGAGGTTGATCCAGTTGAAGAGACGGTATCGTCGATTCAGTTGCTTGGGGAGAAGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

12.42

Weight (kDa)

6.74

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 166
AclWI GGATC 1 cut(s) 299
AcsI RAATTY 4 cut(s) 61, 95, 160, 227
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 1 cut(s) 108
AgsI TTSAA 2 cut(s) 196, 314
AloI GAACNNNNNNTCC 2 cut(s) 52, 84
AluBI AGCT 2 cut(s) 83, 210
AluI AGCT 2 cut(s) 83, 210
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 1 cut(s) 299
AoxI GGCC 2 cut(s) 34, 42
ApoI RAATTY 4 cut(s) 61, 95, 160, 227
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 34, 43
AsuHPI GGTGA 2 cut(s) 65, 134
AsuII TTCGAA 1 cut(s) 223
BanI GGYRCC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 72, 246
BfoI RGCGCY 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 34, 43
BmiI GGNNCC 1 cut(s) 168
BmsI GCATC 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 211
Bpu14I TTCGAA 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 167
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 103, 133
Bse1I ACTGG 1 cut(s) 308
BseGI GGATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 2 cut(s) 249, 301
BshFI GGCC 2 cut(s) 36, 44
BshNI GGYRCC 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 311
BsmBI CGTCTC 1 cut(s) 311
BsnI GGCC 2 cut(s) 36, 44
Bsp119I TTCGAA 1 cut(s) 223
Bsp143I GATC 1 cut(s) 304
BspANI GGCC 2 cut(s) 36, 44
BspCNI CTCAG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 299
BspT104I TTCGAA 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 166
BsrI ACTGG 1 cut(s) 308
BssMI GATC 1 cut(s) 304
BssNI GRCGYC 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 167
BstBI TTCGAA 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 183, 211
BstF5I GGATG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 36, 44
BtsCI GGATG 1 cut(s) 97
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 34, 43
Csp6I GTAC 1 cut(s) 107
CviJI RGCY 4 cut(s) 36, 44, 83, 210
CviKI_1 RGCY 4 cut(s) 36, 44, 83, 210
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 2 cut(s) 183, 211
DinI GGCGCC 1 cut(s) 168
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
DrdI GACNNNNNNGTC 1 cut(s) 325
DseDI GACNNNNNNGTC 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 61
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 311
FaiI YATR 1 cut(s) 156
FokI GGATG 1 cut(s) 104
FspBI CTAG 2 cut(s) 72, 246
GlaI GCGC 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 2 cut(s) 36, 44
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 167
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 3 cut(s) 20, 242, 331
HphI GGTGA 2 cut(s) 65, 134
Hpy188I TCNGA 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 331
HpyCH4III ACNGT 1 cut(s) 322
HpyF3I CTNAG 2 cut(s) 183, 211
Hsp92I GRCGYC 1 cut(s) 167
HspAI GCGC 1 cut(s) 167
KasI GGCGCC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 304
LpnPI CCDG 5 cut(s) 9, 114, 150, 198, 321
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 72, 246
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 4 cut(s) 208, 211, 212, 326
MluCI AATT 6 cut(s) 8, 61, 85, 95, 160, 227
Mly113I GGCGCC 1 cut(s) 167
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 5 cut(s) 7, 49, 227, 279, 292
MseI TTAA 2 cut(s) 177, 255
NarI GGCGCC 1 cut(s) 167
NdeII GATC 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 168
NspV TTCGAA 1 cut(s) 223
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PfeI GAWTC 2 cut(s) 242, 331
PleI GAGTC 1 cut(s) 28
PluTI GGCGCC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 34, 43
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 177, 255
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 2 cut(s) 34, 43
SchI GAGTC 1 cut(s) 29
SetI ASST 6 cut(s) 55, 77, 85, 154, 212, 303
SfaNI GCATC 1 cut(s) 115
SfoI GGCGCC 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 223
Sse9I AATT 6 cut(s) 8, 61, 85, 95, 160, 227
SspDI GGCGCC 1 cut(s) 166
SspMI CTAG 2 cut(s) 72, 246
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 3 cut(s) 65, 223, 329
TasI AATT 6 cut(s) 8, 61, 85, 95, 160, 227
TfiI GAWTC 2 cut(s) 242, 331
Tru1I TTAA 2 cut(s) 177, 255
Tru9I TTAA 2 cut(s) 177, 255
TspDTI ATGAA 3 cut(s) 108, 203, 219
TspGWI ACGGA 1 cut(s) 124
XapI RAATTY 4 cut(s) 61, 95, 160, 227
XspI CTAG 2 cut(s) 72, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.