Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

30469832 .. 30479739

Gene Structure 9908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG302400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCTCGTAGCGGAGGTAGTCATCGTCGTCGGAATAGGGTTTGATTCTGTAACCCACAAGCCCAAGACCGCCATCCTCGCCTCTGCTGATGGCGGAGACCCGAAGAACCTCTCAAACCTCAGCCACATAGCTCAGTGGGAAACTGCTCGGCTTCAAGCAGAAGCTAGATTCTCCAGACAGTCAAAACTACTCATCGGTCATGACCAACCTCCTAGGTTTGGACCCGTGCCTGTACCACAATGCCTTGACATGAATGAAAGAGCACGAGAAATTCGATTACTGTTAAAGTCAATATTAGCTGCAGACAGTGGTGCCCAATTAGGTGGTGGTATTGTTAGTACAGCCACCCACGTTGGGCAGGAGGTTGCTTCATTTGGTAAAGTAGATGTTGAGGGCTTGCTTACTAATTGTGATCAGTTTGAGGCTCCAAGAACCAGTACATCAGTTCTGGGTTTTGATGAAGTACTTTTTGGGGAGTCCGGTACTAATAATGACTATGGTGAACTGTTGGAGGCATTACTACAGCACAACCATAACAGTACTGGATTTGAAGTTGGGGATGCTTGGAGTTTGGAACAACGTGAAACAGTAATGATGAGCGAGCCGGGAACAACTCATTGGAGAGGCATAGATGAGTCAAAGGGACAAGTTGTTTATGAACATGCACGAAATAATGTAGGAATTCAGAAGCTCAAGCTCCGGATTCTCTTTGAATTTATAAAGGGTGTAATTGAGAAGCTCAAAAAACAATATGCTGGAGAAAGCTTTTCACATATAGACCTTCCTTTACTAGAGCCTGCTGCTTATGCCCAGTCAAGATACCATTCTGAAGATCATAACCTTCCAGTCATTACCTCTAAGGATTTCCAGACCACGTTTCAGGAAAACAAGCCCTGGCTAATTCAGTTAGCTCAGTTGGCTGGACGGCGCCGAAAAAGACGAACTGGACAAGCTGATCTTTGGCGCCGGAGGAAGACGAAGGCGGTCTGGAGAGACGACGTTAACAAGCACCAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

339

Amino Acids

37.85

Weight (kDa)

6.88

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	719
AccB1I	GGYRCC	3 cut(s)	311, 927, 963
AccIII	TCCGGA	1 cut(s)	699
AciI	CCGC	4 cut(s)	11, 69, 93, 983
AcsI	RAATTY	3 cut(s)	270, 681, 713
AcuI	CTGAAG	1 cut(s)	849
AcyI	GRCGYC	2 cut(s)	928, 964
AfaI	GTAC	6 cut(s)	234, 340, 439, 465, 484, 541
AfiI	CCNNNNNNNGG	2 cut(s)	218, 354
AgsI	TTSAA	3 cut(s)	155, 551, 713
AjnI	CCWGG	2 cut(s)	893, 1011
AjuI	GAANNNNNNNTTGG	4 cut(s)	453, 485, 601, 633
AluBI	AGCT	9 cut(s)	131, 164, 299, 691, 697, 739, 765, 911, 953
AluI	AGCT	9 cut(s)	131, 164, 299, 691, 697, 739, 765, 911, 953
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	90, 987
Aor13HI	TCCGGA	1 cut(s)	699
ApeKI	GCWGC	2 cut(s)	299, 800
ApoI	RAATTY	3 cut(s)	270, 681, 713
AspA2I	CCTAGG	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	930, 966
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	221
AvrII	CCTAGG	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	316
BanI	GGYRCC	3 cut(s)	311, 927, 963
BauI	CACGAG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	265
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	286, 787
BccI	CCATC	2 cut(s)	80, 83
BceAI	ACGGC	1 cut(s)	941
BciT130I	CCWGG	2 cut(s)	895, 1013
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	90, 987
BfaI	CTAG	3 cut(s)	165, 213, 791
BfmI	CTRYAG	2 cut(s)	300, 521
BfoI	RGCGCY	2 cut(s)	931, 967
BisI	GCNGC	2 cut(s)	300, 801
BlnI	CCTAGG	1 cut(s)	212
BlsI	GCNGC	2 cut(s)	301, 802
BmcAI	AGTACT	2 cut(s)	465, 541
Bme1390I	CCNGG	3 cut(s)	606, 895, 1013
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	5 cut(s)	223, 313, 426, 929, 965
BmrFI	CCNGG	3 cut(s)	606, 895, 1013
BmrI	ACTGGG	1 cut(s)	805
BmsI	GCATC	1 cut(s)	550
BmuI	ACTGGG	1 cut(s)	805
BpiI	GAAGAC	1 cut(s)	980
BpmI	CTGGAG	3 cut(s)	157, 777, 1009
Bpu10I	CCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	677
BpuMI	CCSGG	1 cut(s)	606
BsaHI	GRCGYC	2 cut(s)	928, 964
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	212, 893
BsaWI	WCCGGW	2 cut(s)	479, 699
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 354
Bse1I	ACTGG	5 cut(s)	435, 547, 811, 845, 949
BseAI	TCCGGA	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	895, 1013
BseDI	CCNNGG	2 cut(s)	212, 893
BseGI	GGATG	2 cut(s)	72, 565
BseLI	CCNNNNNNNGG	2 cut(s)	218, 354
BseMII	CTCAG	3 cut(s)	133, 146, 926
BseNI	ACTGG	5 cut(s)	435, 547, 811, 845, 949
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	286, 787
BshNI	GGYRCC	3 cut(s)	311, 927, 963
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	4 cut(s)	480, 605, 700, 967
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	2 cut(s)	218, 354
BsmAI	GTCTC	2 cut(s)	90, 987
BsmBI	CGTCTC	1 cut(s)	987
BsmFI	GGGAC	1 cut(s)	657
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	265, 316
Bsp13I	TCCGGA	1 cut(s)	699
Bsp143I	GATC	3 cut(s)	412, 832, 955
BspACI	CCGC	4 cut(s)	11, 69, 93, 983
BspCNI	CTCAG	3 cut(s)	132, 145, 925
BspEI	TCCGGA	1 cut(s)	699
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	5 cut(s)	223, 313, 426, 929, 965
BspMAI	CTGCAG	1 cut(s)	304
BspT107I	GGYRCC	3 cut(s)	311, 927, 963
BspTNI	GGTCTC	1 cut(s)	90
BsrI	ACTGG	5 cut(s)	435, 547, 811, 845, 949
BssECI	CCNNGG	2 cut(s)	212, 893
BssMI	GATC	3 cut(s)	412, 832, 955
BssNI	GRCGYC	2 cut(s)	928, 964
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	895, 1013
Bst4CI	ACNGT	6 cut(s)	180, 282, 308, 507, 539, 589
BstACI	GRCGYC	2 cut(s)	928, 964
BstC8I	GCNNGC	3 cut(s)	398, 602, 798
BstDEI	CTNAG	4 cut(s)	119, 132, 858, 912
BstF5I	GGATG	2 cut(s)	72, 565
BstH2I	RGCGCY	2 cut(s)	931, 967
BstHHI	GCGC	2 cut(s)	930, 966
BstKTI	GATC	3 cut(s)	415, 835, 958
BstMAI	GTCTC	2 cut(s)	90, 987
BstMBI	GATC	3 cut(s)	412, 832, 955
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 806, 917
BstNI	CCWGG	2 cut(s)	895, 1013
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	3 cut(s)	604, 893, 1011
BstSFI	CTRYAG	2 cut(s)	300, 521
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	286, 787
BstV2I	GAAGAC	1 cut(s)	980
BstXI	CCANNNNNNTGG	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	72, 565
BtsIMutI	CAGTG	2 cut(s)	140, 313
Cac8I	GCNNGC	3 cut(s)	398, 602, 798
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	2 cut(s)	930, 966
Cfr13I	GGNCC	1 cut(s)	221
CsiI	ACCWGGT	1 cut(s)	1011
Csp6I	GTAC	6 cut(s)	233, 339, 438, 464, 483, 540
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	3 cut(s)	200, 250, 662
CviQI	GTAC	6 cut(s)	233, 339, 438, 464, 483, 540
DdeI	CTNAG	4 cut(s)	119, 132, 858, 912
DinI	GGCGCC	2 cut(s)	929, 965
DpnI	GATC	3 cut(s)	414, 834, 957
DpnII	GATC	3 cut(s)	412, 832, 955
EciI	GGCGGA	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	849
EcoRI	GAATTC	1 cut(s)	681
EcoRII	CCWGG	2 cut(s)	893, 1011
EcoT14I	CCWWGG	1 cut(s)	212
EgeI	GGCGCC	2 cut(s)	929, 965
EheI	GGCGCC	2 cut(s)	929, 965
ErhI	CCWWGG	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	987
FaeI	CATG	3 cut(s)	203, 253, 665
FalI	AAGNNNNNCTT	2 cut(s)	942, 974
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	3 cut(s)	199, 249, 661
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	300, 801
FokI	GGATG	2 cut(s)	59, 572
Fsp4HI	GCNGC	2 cut(s)	300, 801
FspBI	CTAG	3 cut(s)	165, 213, 791
GlaI	GCGC	2 cut(s)	929, 965
GluI	GCNGC	2 cut(s)	300, 801
GsuI	CTGGAG	3 cut(s)	157, 777, 1009
HaeII	RGCGCY	2 cut(s)	931, 967
HapII	CCGG	4 cut(s)	480, 605, 700, 967
HhaI	GCGC	2 cut(s)	930, 966
Hin1I	GRCGYC	2 cut(s)	928, 964
Hin1II	CATG	3 cut(s)	203, 253, 665
Hin6I	GCGC	2 cut(s)	928, 964
HinP1I	GCGC	2 cut(s)	928, 964
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HindIII	AAGCTT	1 cut(s)	763
HinfI	GANTC	5 cut(s)	44, 168, 476, 635, 703
HpaI	GTTAAC	1 cut(s)	1003
HpaII	CCGG	4 cut(s)	480, 605, 700, 967
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	2 cut(s)	503, 1003
Hpy188I	TCNGA	3 cut(s)	32, 687, 829
Hpy188III	TCNNGA	7 cut(s)	174, 200, 700, 816, 868, 881, 988
Hpy8I	GTNNAC	2 cut(s)	503, 1003
Hpy99I	CGWCG	3 cut(s)	29, 32, 1001
HpyAV	CCTTC	3 cut(s)	791, 851, 973
HpyCH4III	ACNGT	6 cut(s)	180, 282, 308, 507, 539, 589
HpyCH4IV	ACGT	4 cut(s)	351, 580, 875, 999
HpyCH4V	TGCA	2 cut(s)	302, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 806, 917
HpyF3I	CTNAG	4 cut(s)	119, 132, 858, 912
HpySE526I	ACGT	4 cut(s)	351, 580, 875, 999
Hsp92I	GRCGYC	2 cut(s)	928, 964
Hsp92II	CATG	3 cut(s)	203, 253, 665
HspAI	GCGC	2 cut(s)	928, 964
KasI	GGCGCC	2 cut(s)	927, 963
Kpn2I	TCCGGA	1 cut(s)	699
Ksp22I	TGATCA	1 cut(s)	412
KspAI	GTTAAC	1 cut(s)	1003
Kzo9I	GATC	3 cut(s)	412, 832, 955
LmnI	GCTCC	2 cut(s)	430, 702
Lsp1109I	GCAGC	2 cut(s)	286, 787
LweI	GCATC	1 cut(s)	550
MabI	ACCWGGT	1 cut(s)	1011
MaeI	CTAG	3 cut(s)	165, 213, 791
MaeII	ACGT	4 cut(s)	351, 580, 875, 999
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	3 cut(s)	414, 834, 957
MboI	GATC	3 cut(s)	412, 832, 955
MboII	GAAGA	3 cut(s)	115, 842, 985
MhlI	GDGCHC	2 cut(s)	265, 316
MluCI	AATT	7 cut(s)	270, 317, 406, 681, 713, 729, 900
Mly113I	GGCGCC	2 cut(s)	928, 964
MlyI	GAGTC	2 cut(s)	485, 644
MmeI	TCCRAC	2 cut(s)	10, 489
MroI	TCCGGA	1 cut(s)	699
MseI	TTAA	3 cut(s)	284, 1002, 1018
MspI	CCGG	4 cut(s)	480, 605, 700, 967
MspR9I	CCNGG	3 cut(s)	606, 895, 1013
MvaI	CCWGG	2 cut(s)	895, 1013
MwoI	GCNNNNNNNGC	3 cut(s)	77, 806, 917
NarI	GGCGCC	2 cut(s)	928, 964
NciI	CCSGG	1 cut(s)	606
NdeII	GATC	3 cut(s)	412, 832, 955
NlaIII	CATG	3 cut(s)	203, 253, 665
NlaIV	GGNNCC	5 cut(s)	223, 313, 426, 929, 965
NmeAIII	GCCGAG	1 cut(s)	127
NspI	RCATGY	1 cut(s)	665
PagI	TCATGA	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PfeI	GAWTC	3 cut(s)	44, 168, 703
PkrI	GCNGC	2 cut(s)	301, 802
PleI	GAGTC	2 cut(s)	484, 643
PluTI	GGCGCC	2 cut(s)	931, 967
PpsI	GAGTC	2 cut(s)	484, 643
PsiI	TTATAA	1 cut(s)	719
Psp6I	CCWGG	2 cut(s)	893, 1011
PspGI	CCWGG	2 cut(s)	893, 1011
PspN4I	GGNNCC	5 cut(s)	223, 313, 426, 929, 965
PspPI	GGNCC	1 cut(s)	221
PstI	CTGCAG	1 cut(s)	304
RsaI	GTAC	6 cut(s)	234, 340, 439, 465, 484, 541
RsaNI	GTAC	6 cut(s)	233, 339, 438, 464, 483, 540
SaqAI	TTAA	3 cut(s)	284, 1002, 1018
SatI	GCNGC	2 cut(s)	300, 801
Sau3AI	GATC	3 cut(s)	412, 832, 955
Sau96I	GGNCC	1 cut(s)	221
ScaI	AGTACT	2 cut(s)	465, 541
SchI	GAGTC	2 cut(s)	485, 644
ScrFI	CCNGG	3 cut(s)	606, 895, 1013
SduI	GDGCHC	2 cut(s)	265, 316
SexAI	ACCWGGT	1 cut(s)	1011
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	2 cut(s)	300, 521
SfoI	GGCGCC	2 cut(s)	929, 965
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	7 cut(s)	270, 317, 406, 681, 713, 729, 900
SsiI	CCGC	4 cut(s)	11, 69, 93, 983
SspDI	GGCGCC	2 cut(s)	927, 963
SspI	AATATT	1 cut(s)	294
SspMI	CTAG	3 cut(s)	165, 213, 791
StyD4I	CCNGG	3 cut(s)	604, 893, 1011
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	6 cut(s)	180, 282, 308, 507, 539, 589
TaiI	ACGT	4 cut(s)	354, 583, 878, 1002
TaqI	TCGA	1 cut(s)	274
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	7 cut(s)	270, 317, 406, 681, 713, 729, 900
TatI	WGTACW	4 cut(s)	338, 437, 463, 539
TfiI	GAWTC	3 cut(s)	44, 168, 703
Tru1I	TTAA	3 cut(s)	284, 1002, 1018
Tru9I	TTAA	3 cut(s)	284, 1002, 1018
TscAI	CASTG	2 cut(s)	140, 313
TseI	GCWGC	2 cut(s)	299, 800
TspDTI	ATGAA	5 cut(s)	266, 270, 360, 474, 672
TspRI	CASTG	2 cut(s)	140, 313
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	3 cut(s)	270, 681, 713
XceI	RCATGY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	2 cut(s)	323, 539
XmaJI	CCTAGG	1 cut(s)	212
XspI	CTAG	3 cut(s)	165, 213, 791
ZrmI	AGTACT	2 cut(s)	465, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.