Rh2DG344100
MYB Family

Protein of unknown function (DUF3755)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
N/A
Physical Location & Seq
Forward (+)
46806362 .. 46810299
3938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG344100.1

Sequence Viewer

Length: 420 bp
ATGGACAATGATGATGGCATCTCATACAAAGCTATTGGTGGGGTTACAGGCGAGCTTTTGGAGCAGAATGCACAAGCCTTGAATCAAATTTCTACCAATCTTCAAGCTTTCCAGATACAGGAGAACATCAACCTCTTCTGCCAGGCTCGAGATAACATCCTCAAAATAATGAATGACTTGAATGACATGCCAGACGTAATGAAGCAGATGCCACCACTTCCAGTGAAAGTAAATGAAGAGCTCGTAAACCACGTCCTCCCCCACCTGCACATCAAATGCAATGATACTTATGCATGTGGGATTCTGTATACTTCTCAAAACATGTCCTGCATCCGAATGTGGCTGGAATTTCTCAAATCAATTCTTGATCTCTGGAGAAACAATATGGAGTTGATGAACCACCTTTGCCAACTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3755 Myb_DNA-binding

Protein Analysis

139

Amino Acids

15.99

Weight (kDa)

4.85

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3755 PF12579 36 - 69 2.5e-19 Protein of unknown function (DUF3755)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 308
AcsI RAATTY 2 cut(s) 87, 347
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 3 cut(s) 82, 104, 181
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 4 cut(s) 32, 55, 107, 241
AluI AGCT 4 cut(s) 32, 55, 107, 241
Alw21I GWGCWC 1 cut(s) 243
Ama87I CYCGRG 1 cut(s) 147
ApoI RAATTY 2 cut(s) 87, 347
AvaI CYCGRG 1 cut(s) 147
BanII GRGCYC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 243
BccI CCATC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 273
Bme1390I CCNGG 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 3 cut(s) 27, 198, 339
BpmI CTGGAG 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 156, 330
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 118
BsmI GAATGC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 367
BspMI ACCTGC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 1 cut(s) 221
BssMI GATC 1 cut(s) 367
BssNAI GTATAC 1 cut(s) 309
Bst1107I GTATAC 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 143
Bst6I CTCTTC 2 cut(s) 140, 231
BstC8I GCNNGC 1 cut(s) 53
BstF5I GGATG 2 cut(s) 156, 330
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 3 cut(s) 190, 297, 325
BstSCI CCNGG 1 cut(s) 141
BstZ17I GTATAC 1 cut(s) 309
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 2 cut(s) 156, 330
BtsIMutI CAGTG 1 cut(s) 228
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 53
CviAII CATG 3 cut(s) 187, 294, 322
CviJI RGCY 7 cut(s) 32, 55, 77, 107, 146, 241, 343
CviKI_1 RGCY 7 cut(s) 32, 55, 77, 107, 146, 241, 343
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
Eam1104I CTCTTC 2 cut(s) 140, 231
EarI CTCTTC 2 cut(s) 140, 231
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 3 cut(s) 190, 297, 325
FaiI YATR 7 cut(s) 25, 188, 291, 295, 309, 323, 386
FatI CATG 3 cut(s) 186, 293, 321
FblI GTMKAC 1 cut(s) 308
FokI GGATG 2 cut(s) 143, 317
FriOI GRGCYC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 394
Hin1II CATG 3 cut(s) 190, 297, 325
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 2 cut(s) 82, 301
Hpy166II GTNNAC 2 cut(s) 247, 309
Hpy188I TCNGA 1 cut(s) 335
Hpy188III TCNNGA 4 cut(s) 112, 149, 365, 373
Hpy8I GTNNAC 2 cut(s) 247, 309
HpyCH4IV ACGT 2 cut(s) 195, 252
HpyCH4V TGCA 5 cut(s) 71, 268, 279, 293, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpySE526I ACGT 2 cut(s) 195, 252
Hsp92II CATG 3 cut(s) 190, 297, 325
Kzo9I GATC 1 cut(s) 367
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 61
LweI GCATC 3 cut(s) 27, 198, 339
MaeII ACGT 2 cut(s) 195, 252
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 3 cut(s) 92, 127, 248
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 4 cut(s) 87, 347, 360, 415
MnlI CCTC 3 cut(s) 143, 170, 266
Mph1103I ATGCAT 1 cut(s) 295
MslI CAYNNNNRTG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 1 cut(s) 367
NlaIII CATG 3 cut(s) 190, 297, 325
NsiI ATGCAT 1 cut(s) 295
NspI RCATGY 3 cut(s) 190, 297, 325
PaeR7I CTCGAG 1 cut(s) 147
PaqCI CACCTGC 1 cut(s) 273
PciI ACATGT 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 82, 301
PscI ACATGT 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 367
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 243
SetI ASST 9 cut(s) 34, 57, 109, 135, 198, 243, 255, 267, 405
SfaNI GCATC 3 cut(s) 27, 198, 339
Sfr274I CTCGAG 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 4 cut(s) 87, 347, 360, 415
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 141
TaiI ACGT 2 cut(s) 198, 255
TaqI TCGA 1 cut(s) 148
TasI AATT 4 cut(s) 87, 347, 360, 415
TfiI GAWTC 2 cut(s) 82, 301
TscAI CASTG 1 cut(s) 228
TspDTI ATGAA 4 cut(s) 185, 215, 249, 410
TspRI CASTG 1 cut(s) 228
XapI RAATTY 2 cut(s) 87, 347
XceI RCATGY 3 cut(s) 190, 297, 325
XhoI CTCGAG 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 308
Zsp2I ATGCAT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.