Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

77193466 .. 77193747

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG596000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGACTGCATTGCAGAGATCATCTACTTCATTTAGAAGGCAAGGCTCTTCCGGTCGCATTTGGGACCAGGATCGGCGCAAAGCACTCCGAAAAAAGTCCACTAAACTGCCATTTGCCATCGACCAAAGTGTTGACATGAACCACCCAAATTGTAACGAAGAATTTCAAGGGAGGTCAGTTGATTCACATTCCATAACAAATTCATCTTCACCTTGTCATCGTGAACAAAAAGCTTCAAGGTGTTCTTTTTATAACCTCTTCTGCCGATGTTTTGAGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

93

Amino Acids

10.78

Weight (kDa)

9.65

Isoelectric Point (pI)

71.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4666	PF15697	1 - 65	2.1e-09	Domain of unknown function (DUF4666)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	161, 199
AgsI	TTSAA	2 cut(s)	167, 237
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
AlwI	GGATC	1 cut(s)	78
ApoI	RAATTY	2 cut(s)	161, 199
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	64
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	17, 70
BspLI	GGNNCC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	8
BssMI	GATC	2 cut(s)	17, 70
Bst2UI	CCWGG	1 cut(s)	68
Bst6I	CTCTTC	2 cut(s)	52, 263
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	20, 73
BstMBI	GATC	2 cut(s)	17, 70
BstMCI	CGRYCG	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	131, 166
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	2 cut(s)	45, 233
CviKI_1	RGCY	2 cut(s)	45, 233
DpnI	GATC	2 cut(s)	19, 72
DpnII	GATC	2 cut(s)	17, 70
Eam1104I	CTCTTC	2 cut(s)	52, 263
EarI	CTCTTC	2 cut(s)	52, 263
Eco47I	GGWCC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	139
FaiI	YATR	3 cut(s)	137, 194, 252
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	77
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	3 cut(s)	99, 133, 224
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	3 cut(s)	99, 133, 224
HpyAV	CCTTC	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	8, 13
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	17, 70
LguI	GCTCTTC	1 cut(s)	52
LpnPI	CCDG	3 cut(s)	53, 64, 80
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	2 cut(s)	19, 72
MboI	GATC	2 cut(s)	17, 70
MboII	GAAGA	4 cut(s)	39, 170, 198, 250
MluCI	AATT	3 cut(s)	148, 161, 199
MnlI	CCTC	3 cut(s)	165, 266, 268
MroXI	GAANNNNTTC	1 cut(s)	162
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	17, 70
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	182
PsiI	TTATAA	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	52
Sau3AI	GATC	2 cut(s)	17, 70
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	6 cut(s)	176, 214, 235, 242, 258, 279
SgeI	CNNG	9 cut(s)	53, 63, 79, 80, 148, 179, 225, 233, 249
SinI	GGWCC	1 cut(s)	64
Sse9I	AATT	3 cut(s)	148, 161, 199
StyD4I	CCNGG	1 cut(s)	66
TaqI	TCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	148, 161, 199
TfiI	GAWTC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	18, 152, 192
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	161, 199
XmnI	GAANNNNTTC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.