Rh2AG383000
MYB Family

DDE superfamily endonuclease

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
N/A
Physical Location & Seq
Reverse (-)
57304194 .. 57307788
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG383000.1

Sequence Viewer

Length: 318 bp
ATGTGTATGATGTGTCTTGCCGTAGAACGACATTATAGAAAATATTTGTTGAAGAATAAACCAGACGCTAATAGAGATGTATGGATTCCAACTGCTACTGATTATGTAGATGAGATTGATCAAAACAATGATGGCCTAGATGACATTGCTGAAGTAATGACTATCCCTCCACTTGTAGTAGTAGAAGGTTCCAATCAAGCTCCAAGGAATTGGAAAAGGAAGAGGATAGACGCATATGTACTAGGGTTGACCCAAATGGTTGGTGCAATGTCCAAGACTATTGAAGCAATGGATAAGCTTGTGGGAAGTCTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.87

Weight (kDa)

5.29

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 240
AgsI TTSAA 2 cut(s) 52, 284
AluBI AGCT 2 cut(s) 200, 298
AluI AGCT 2 cut(s) 200, 298
AoxI GGCC 1 cut(s) 133
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 5
BclI TGATCA 1 cut(s) 118
BfaI CTAG 2 cut(s) 137, 242
BmiI GGNNCC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bse3DI GCAATG 3 cut(s) 144, 273, 294
BseDI CCNNGG 1 cut(s) 203
BseMI GCAATG 3 cut(s) 144, 273, 294
BshFI GGCC 1 cut(s) 135
BsnI GGCC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 118
BspANI GGCC 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 190
BsrDI GCAATG 3 cut(s) 144, 273, 294
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 215
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstXI CCANNNNNNTGG 2 cut(s) 210, 260
BsuRI GGCC 1 cut(s) 135
CseI GACGC 2 cut(s) 74, 239
Csp6I GTAC 1 cut(s) 239
CviJI RGCY 3 cut(s) 135, 200, 298
CviKI_1 RGCY 3 cut(s) 135, 200, 298
CviQI GTAC 1 cut(s) 239
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaiI YATR 7 cut(s) 8, 36, 82, 105, 235, 237, 316
FauNDI CATATG 1 cut(s) 235
FbaI TGATCA 1 cut(s) 118
FspBI CTAG 2 cut(s) 137, 242
HaeIII GGCC 1 cut(s) 135
HgaI GACGC 2 cut(s) 74, 239
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 249
Hpy8I GTNNAC 1 cut(s) 249
HpyAV CCTTC 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 266, 314
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 1 cut(s) 75
MaeI CTAG 2 cut(s) 137, 242
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 2 cut(s) 64, 232
MluCI AATT 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 2 cut(s) 177, 216
NdeI CATATG 1 cut(s) 235
NdeII GATC 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 190
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
Sau3AI GATC 1 cut(s) 118
SetI ASST 3 cut(s) 190, 202, 300
SgeI CNNG 9 cut(s) 29, 74, 149, 185, 209, 216, 254, 286, 311
Sse9I AATT 1 cut(s) 208
SspI AATATT 1 cut(s) 44
SspMI CTAG 2 cut(s) 137, 242
StyI CCWWGG 1 cut(s) 203
TasI AATT 1 cut(s) 208
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 1 cut(s) 85
XspI CTAG 2 cut(s) 137, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.