Rh1DG391800
MYB Family

Myb-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
N/A
Physical Location & Seq
Forward (+)
61034438 .. 61034833
396 bp
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UTR
Exon/CDS
Intron
Rh1DG391800.1

Sequence Viewer

Length: 396 bp
ATGGGGATTGATCCAATTACTCATGCGCCTCTCCAAAAACAAGTCACTACAACCCCACAAGAAACGCCTTGTGAAGCCAATATTCAACAAAGTGTGAACATCCCGGAGCATGGAGTCTCCGGCAACGAAAATGGCAGCTCTGCAACTGAGAATTCCTTAAGCAATGAAGCTCAGTCACTAATTGAGGTCAATGCCAATGGTGACGATGACCCTTTGGTGAATTACATATTATCCGATACATTTCTCCAGGATTGGTCATGGAATTTTCCGGCTGTGGAAGACAATTACAGTGATCTTGGCTTGTCTTCAACTTCATCAGAGGATAGCTCAGCTTGGTTTATGGACTGCAAGGATTTTGGGGTTGAGGATTTCGAGCTTGGAAATTGTATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.26

Weight (kDa)

4.05

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 2 cut(s) 151, 262
AfiI CCNNNNNNNGG 1 cut(s) 110
AflII CTTAAG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 86, 309
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 5 cut(s) 138, 170, 327, 332, 376
AluI AGCT 5 cut(s) 138, 170, 327, 332, 376
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 2 cut(s) 151, 262
AspLEI GCGC 1 cut(s) 28
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 212, 229
BbsI GAAGAC 2 cut(s) 285, 297
BbvI GCAGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 121
BfrI CTTAAG 1 cut(s) 157
BisI GCNGC 1 cut(s) 136
BlpI GCTNAGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 137
Bme1390I CCNGG 2 cut(s) 104, 248
BmrFI CCNGG 2 cut(s) 104, 248
BpiI GAAGAC 2 cut(s) 285, 297
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpmI CTGGAG 1 cut(s) 230
Bpu1102I GCTNAGC 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 3 cut(s) 138, 185, 342
BseXI GCAGC 1 cut(s) 147
BsiSI CCGG 3 cut(s) 104, 120, 269
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 10, 292
Bsp1720I GCTNAGC 1 cut(s) 328
BspCNI CTCAG 3 cut(s) 139, 184, 341
BspPI GGATC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 169
BssMI GATC 2 cut(s) 10, 292
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 290
BstAFI CTTAAG 1 cut(s) 157
BstDEI CTNAG 3 cut(s) 147, 171, 328
BstF5I GGATG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 13, 295
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 2 cut(s) 10, 292
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 102, 246
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 2 cut(s) 285, 297
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 295
CfoI GCGC 1 cut(s) 28
CviAII CATG 3 cut(s) 23, 110, 258
CviJI RGCY 8 cut(s) 77, 138, 170, 272, 300, 327, 332, 376
CviKI_1 RGCY 8 cut(s) 77, 138, 170, 272, 300, 327, 332, 376
DdeI CTNAG 3 cut(s) 147, 171, 328
DpnI GATC 2 cut(s) 12, 294
DpnII GATC 2 cut(s) 10, 292
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 246
FaeI CATG 3 cut(s) 26, 113, 261
FaiI YATR 5 cut(s) 24, 111, 227, 259, 341
FatI CATG 3 cut(s) 22, 109, 257
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 136
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 136
GsuI CTGGAG 1 cut(s) 230
HapII CCGG 3 cut(s) 104, 120, 269
HhaI GCGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 26, 113, 261
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 114
HpaII CCGG 3 cut(s) 104, 120, 269
HphI GGTGA 2 cut(s) 212, 229
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 235, 319
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4V TGCA 2 cut(s) 143, 348
HpyF3I CTNAG 3 cut(s) 147, 171, 328
Hsp92II CATG 3 cut(s) 26, 113, 261
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 10, 292
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 117, 133, 233, 260, 282
Lsp1109I GCAGC 1 cut(s) 147
MaeIII GTNAC 3 cut(s) 43, 174, 200
MalI GATC 2 cut(s) 12, 294
MboI GATC 2 cut(s) 10, 292
MboII GAAGA 2 cut(s) 290, 297
MluCI AATT 8 cut(s) 15, 151, 180, 220, 262, 283, 382, 391
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 4 cut(s) 39, 178, 313, 358
MseI TTAA 2 cut(s) 158, 394
MspCI CTTAAG 1 cut(s) 157
MspI CCGG 3 cut(s) 104, 120, 269
MspR9I CCNGG 2 cut(s) 104, 248
MvaI CCWGG 1 cut(s) 248
NciI CCSGG 1 cut(s) 104
NdeII GATC 2 cut(s) 10, 292
NlaIII CATG 3 cut(s) 26, 113, 261
NmuCI GTSAC 3 cut(s) 43, 174, 200
PfoI TCCNGGA 2 cut(s) 102, 246
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 158, 394
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 2 cut(s) 10, 292
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 104, 248
SetI ASST 6 cut(s) 140, 172, 189, 329, 334, 378
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 8 cut(s) 15, 151, 180, 220, 262, 283, 382, 391
SspI AATATT 1 cut(s) 82
StyD4I CCNGG 2 cut(s) 102, 246
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 1 cut(s) 372
TasI AATT 8 cut(s) 15, 151, 180, 220, 262, 283, 382, 391
Tru1I TTAA 2 cut(s) 158, 394
Tru9I TTAA 2 cut(s) 158, 394
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 3 cut(s) 43, 174, 200
TseI GCWGC 1 cut(s) 135
Tsp45I GTSAC 3 cut(s) 43, 174, 200
TspDTI ATGAA 2 cut(s) 180, 303
TspRI CASTG 1 cut(s) 295
Vha464I CTTAAG 1 cut(s) 157
XapI RAATTY 2 cut(s) 151, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.