Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1958786 .. 1974063

Gene Structure 15278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG012700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAAAGCTTTGTTATTGGGGCTGTTTGGATATCTCTGGGAGGTAGGCTTGGGTTCGCTCTGGAAGCGGTGTGTGCCGAGATTGTGATCAAGTTTAGGAGACGGGCTTTGGGAGCAACAGAGACGAATAGAAGGAACACAAAATTGAAGCTACAGGTGGAAGAAGATCTGACAATAATGTCGCCGAATCCAGACAAATTGAAGTATCCTGATGCTTCCAGACTCCGGGATGGGACAAGCAGTGTTAGAAAGGGATTCAATTTAGGATTACGACTTTCTTTGCTGTACAGTTTGGAATTTAGAGACAGAGAGACTCTTAATATTGTTGGAGAAGAGGCTTCCAACATTGAAGAGAGACATAGGTTGATAGCAGAAAACGTTCAACCTACATTGCTTCATGAGACAAAGGCTTATCAGATCGTCTTCAAAAGAGAAGATACTTGGTATTTCGCAAAGGAGTTGGGTGATTGTGTACTTTGCACAAAGTGTTTTGAAAATGGAAACTATGGGAAGAACAAATTGAAGTTAGATGTCAAGTATAACGACCAGTACGTTGAAAAGAGTGGACTCCACCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006338 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0016514 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071840 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Myb_DNA-binding SURF2 SWIRM SWIRM-assoc_1

Protein Analysis

193

Amino Acids

22.11

Weight (kDa)

8.99

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
AciI	CCGC	1 cut(s)	68
AclI	AACGTT	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	296
AdeI	CACNNNGTG	1 cut(s)	486
AfaI	GTAC	3 cut(s)	287, 474, 551
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	9 cut(s)	148, 202, 259, 350, 383, 427, 494, 523, 557
AluBI	AGCT	2 cut(s)	9, 151
AluI	AGCT	2 cut(s)	9, 151
Alw26I	GTCTC	6 cut(s)	94, 116, 297, 305, 349, 395
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	415
BccI	CCATC	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	87
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	6 cut(s)	94, 116, 297, 305, 349, 395
BfmI	CTRYAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	216
BglII	AGATCT	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	1 cut(s)	389
Bse8I	GATNNNNATC	1 cut(s)	86
BseGI	GGATG	1 cut(s)	235
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	389
BseNI	ACTGG	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	6 cut(s)	94, 116, 297, 305, 349, 395
BsmBI	CGTCTC	2 cut(s)	94, 116
BsmFI	GGGAC	1 cut(s)	247
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	87, 166, 417
BspACI	CCGC	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	547
BssMI	GATC	3 cut(s)	87, 166, 417
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	2 cut(s)	327, 345
BstAUI	TGTACA	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	3 cut(s)	90, 169, 420
BstMAI	GTCTC	6 cut(s)	94, 116, 297, 305, 349, 395
BstMBI	GATC	3 cut(s)	87, 166, 417
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 74, 113
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	247
CciI	TCATGA	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	286, 473, 550
CviAII	CATG	2 cut(s)	398, 575
CviJI	RGCY	7 cut(s)	9, 23, 49, 107, 151, 338, 410
CviKI_1	RGCY	7 cut(s)	9, 23, 49, 107, 151, 338, 410
CviQI	GTAC	3 cut(s)	286, 473, 550
DpnI	GATC	3 cut(s)	89, 168, 419
DpnII	GATC	3 cut(s)	87, 166, 417
DraIII	CACNNNGTG	1 cut(s)	486
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
Eam1104I	CTCTTC	2 cut(s)	327, 345
EarI	CTCTTC	2 cut(s)	327, 345
Eco32I	GATATC	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	33
Esp3I	CGTCTC	2 cut(s)	94, 116
FaeI	CATG	2 cut(s)	401, 578
FaiI	YATR	5 cut(s)	360, 399, 507, 540, 576
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	397, 574
FbaI	TGATCA	1 cut(s)	87
FokI	GGATG	1 cut(s)	242
HapII	CCGG	1 cut(s)	226
Hin1II	CATG	2 cut(s)	401, 578
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	5 cut(s)	187, 222, 255, 313, 567
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	2 cut(s)	473, 566
Hpy188I	TCNGA	2 cut(s)	171, 417
Hpy188III	TCNNGA	5 cut(s)	62, 191, 209, 219, 398
Hpy8I	GTNNAC	2 cut(s)	473, 566
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	2 cut(s)	378, 552
HpyCH4V	TGCA	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 74, 113
HpySE526I	ACGT	2 cut(s)	378, 552
Hsp92II	CATG	2 cut(s)	401, 578
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	87, 166, 417
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	8 cut(s)	23, 47, 140, 204, 222, 232, 239, 560
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	2 cut(s)	378, 552
MalI	GATC	3 cut(s)	89, 168, 419
MboI	GATC	3 cut(s)	87, 166, 417
MboII	GAAGA	7 cut(s)	173, 176, 344, 362, 415, 446, 523
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	5 cut(s)	143, 197, 259, 296, 518
MlyI	GAGTC	3 cut(s)	216, 307, 561
MmeI	TCCRAC	2 cut(s)	307, 366
MnlI	CCTC	2 cut(s)	35, 328
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	2 cut(s)	318, 580
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	3 cut(s)	65, 74, 113
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	3 cut(s)	87, 166, 417
NlaIII	CATG	2 cut(s)	401, 578
NmeAIII	GCCGAG	1 cut(s)	103
PagI	TCATGA	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	187, 255
PfoI	TCCNGGA	1 cut(s)	225
PleI	GAGTC	3 cut(s)	216, 307, 561
PpsI	GAGTC	3 cut(s)	216, 307, 561
Psp1406I	AACGTT	1 cut(s)	378
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	3 cut(s)	287, 474, 551
RsaNI	GTAC	3 cut(s)	286, 473, 550
SaqAI	TTAA	2 cut(s)	318, 580
Sau3AI	GATC	3 cut(s)	87, 166, 417
SchI	GAGTC	3 cut(s)	216, 307, 561
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	8 cut(s)	11, 46, 153, 159, 365, 381, 388, 555
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	1 cut(s)	152
Sse9I	AATT	5 cut(s)	143, 197, 259, 296, 518
SsiI	CCGC	1 cut(s)	68
SspI	AATATT	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	2 cut(s)	381, 555
TasI	AATT	5 cut(s)	143, 197, 259, 296, 518
TatI	WGTACW	2 cut(s)	285, 472
TfiI	GAWTC	2 cut(s)	187, 255
Tru1I	TTAA	2 cut(s)	318, 580
Tru9I	TTAA	2 cut(s)	318, 580
TscAI	CASTG	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	17, 386
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.