Rh1BG370200
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
N/A
Physical Location & Seq
Reverse (-)
50069440 .. 50069799
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG370200.1

Sequence Viewer

Length: 360 bp
ATGGAGGAATTGGAGGGCGAGTCTGGTAAGTCGGGCCACACGGCCCGTAAAGGTGAGGGGAATTCGAGTTCTAGGTTTTTAGCTGATTTGGATGAATTTGTTGATGTACGGAGTGGTGGTGGTGATGCTGGTTTTCCTGTGAAATCATTAGGTCATAGGAATTTGGCGCCTTTGTTTAATCCTAAGATGAAGTTGAAGAAGAATGAAAGCTCAGGGTATCTTCGAAAATTCGGAGGAGTGGATTCTAGTGGTGTTGGTGTTAAAGATTTGGGAGGGGGTTCGGGTTTGTTGAGGAGTGTTAGAGAGGTTGATCCAGTTGAAGAGATGGTATCGTCGATTCAGTTGCTTGGGGAGAAGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

12.57

Weight (kDa)

6.13

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AclWI GGATC 1 cut(s) 305
AcsI RAATTY 4 cut(s) 61, 95, 160, 227
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 1 cut(s) 108
AgsI TTSAA 2 cut(s) 196, 320
AloI GAACNNNNNNTCC 2 cut(s) 52, 84
AluBI AGCT 2 cut(s) 83, 210
AluI AGCT 2 cut(s) 83, 210
AlwI GGATC 1 cut(s) 305
AoxI GGCC 2 cut(s) 34, 42
ApoI RAATTY 4 cut(s) 61, 95, 160, 227
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 34, 43
AsuHPI GGTGA 2 cut(s) 65, 134
AsuII TTCGAA 1 cut(s) 223
BanI GGYRCC 1 cut(s) 166
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 57
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BfaI CTAG 2 cut(s) 72, 246
BfoI RGCGCY 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 34, 43
BmiI GGNNCC 1 cut(s) 168
BmsI GCATC 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 211
Bpu14I TTCGAA 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 167
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 103, 133
Bse1I ACTGG 1 cut(s) 314
BseGI GGATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 2 cut(s) 249, 307
BshFI GGCC 2 cut(s) 36, 44
BshNI GGYRCC 1 cut(s) 166
BsnI GGCC 2 cut(s) 36, 44
Bsp119I TTCGAA 1 cut(s) 223
Bsp143I GATC 1 cut(s) 310
BspANI GGCC 2 cut(s) 36, 44
BspCNI CTCAG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 166
BsrI ACTGG 1 cut(s) 314
BssMI GATC 1 cut(s) 310
BssNI GRCGYC 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 315
BstACI GRCGYC 1 cut(s) 167
BstBI TTCGAA 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 183, 211
BstF5I GGATG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BsuRI GGCC 2 cut(s) 36, 44
BtsCI GGATG 1 cut(s) 97
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 2 cut(s) 34, 43
Csp6I GTAC 1 cut(s) 107
CviJI RGCY 4 cut(s) 36, 44, 83, 210
CviKI_1 RGCY 4 cut(s) 36, 44, 83, 210
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 2 cut(s) 183, 211
DinI GGCGCC 1 cut(s) 168
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
EcoRI GAATTC 1 cut(s) 61
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
FaiI YATR 1 cut(s) 156
FokI GGATG 1 cut(s) 104
FspBI CTAG 2 cut(s) 72, 246
GlaI GCGC 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 2 cut(s) 36, 44
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 167
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 3 cut(s) 20, 242, 337
HphI GGTGA 2 cut(s) 65, 134
Hpy188I TCNGA 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 337
HpyF3I CTNAG 2 cut(s) 183, 211
Hsp92I GRCGYC 1 cut(s) 167
HspAI GCGC 1 cut(s) 167
KasI GGCGCC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 5 cut(s) 9, 114, 150, 198, 327
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 72, 246
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 4 cut(s) 208, 211, 212, 332
MluCI AATT 5 cut(s) 8, 61, 95, 160, 227
Mly113I GGCGCC 1 cut(s) 167
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 6 cut(s) 7, 49, 227, 266, 285, 298
MseI TTAA 2 cut(s) 177, 261
NarI GGCGCC 1 cut(s) 167
NdeII GATC 1 cut(s) 310
NlaIV GGNNCC 1 cut(s) 168
NspV TTCGAA 1 cut(s) 223
PfeI GAWTC 2 cut(s) 242, 337
PleI GAGTC 1 cut(s) 28
PluTI GGCGCC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 34, 43
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 177, 261
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 2 cut(s) 34, 43
SchI GAGTC 1 cut(s) 29
SetI ASST 6 cut(s) 55, 77, 85, 154, 212, 309
SfaNI GCATC 1 cut(s) 115
SfoI GGCGCC 1 cut(s) 168
SfuI TTCGAA 1 cut(s) 223
Sse9I AATT 5 cut(s) 8, 61, 95, 160, 227
SspDI GGCGCC 1 cut(s) 166
SspMI CTAG 2 cut(s) 72, 246
TaqI TCGA 3 cut(s) 65, 223, 335
TasI AATT 5 cut(s) 8, 61, 95, 160, 227
TfiI GAWTC 2 cut(s) 242, 337
Tru1I TTAA 2 cut(s) 177, 261
Tru9I TTAA 2 cut(s) 177, 261
TspDTI ATGAA 3 cut(s) 108, 203, 219
TspGWI ACGGA 1 cut(s) 124
XapI RAATTY 4 cut(s) 61, 95, 160, 227
XspI CTAG 2 cut(s) 72, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.