Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

68453665 .. 68454952

Gene Structure 1288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG473000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 290 bp

ATGGGAAGATCAGCATGTTGTGATGAAAATGGGTTAAAGAAAGGGCCGTGGACAGCAGAAGAAGATGAAAAGCTGGTGGTGTACATGGAGAGGTGTGGTGGAGATGGGAATCATCATCGCGGCGGAATTAGTTGGAGACAAGTGCCAAAGCTTGCAGGTTTGAAGAGGTGTGGAAAGAGCTGCAGGCTACGATGGACCAACTATCTGAGGCCTGATATCAAGAGGGGAAACTTCTCCCACCAAGAAGAGCAAACCATCATCAATCTCCATAAACTGCTCGGAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

96

Amino Acids

10.96

Weight (kDa)

9.3

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 69	4.2e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 85	6.5e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	146
AccII	CGCG	1 cut(s)	120
AciI	CCGC	2 cut(s)	120, 123
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	3 cut(s)	73, 151, 180
AluI	AGCT	3 cut(s)	73, 151, 180
Alw26I	GTCTC	1 cut(s)	130
AoxI	GGCC	2 cut(s)	44, 209
ApeKI	GCWGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	44, 195
AvaII	GGWCC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	3 cut(s)	98, 186, 263
BceAI	ACGGC	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	130
BfmI	CTRYAG	1 cut(s)	181
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	2 cut(s)	121, 181
BlsI	GCNGC	2 cut(s)	122, 182
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	2 cut(s)	44, 195
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	47
Bse8I	GATNNNNATC	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	167
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	46, 211
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	46, 211
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	2 cut(s)	120, 123
BspANI	GGCC	2 cut(s)	46, 211
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	185
BspMI	ACCTGC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	240
BsrGI	TGTACA	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	8
Bst6I	CTCTTC	2 cut(s)	158, 240
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	153, 185
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	11
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	46, 211
BtgI	CCRYGG	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	101
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	2 cut(s)	153, 185
Cfr13I	GGNCC	2 cut(s)	44, 195
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	2 cut(s)	15, 85
CviJI	RGCY	6 cut(s)	46, 73, 151, 180, 187, 211
CviKI_1	RGCY	6 cut(s)	46, 73, 151, 180, 187, 211
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Eam1104I	CTCTTC	2 cut(s)	158, 240
EarI	CTCTTC	2 cut(s)	158, 240
EciI	GGCGGA	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	195
EcoRV	GATATC	1 cut(s)	217
FaeI	CATG	2 cut(s)	18, 88
FaiI	YATR	3 cut(s)	16, 86, 270
FatI	CATG	2 cut(s)	14, 84
Fnu4HI	GCNGC	2 cut(s)	121, 181
Fsp4HI	GCNGC	2 cut(s)	121, 181
GluI	GCNGC	2 cut(s)	121, 181
HaeIII	GGCC	2 cut(s)	46, 211
Hin1II	CATG	2 cut(s)	18, 88
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	51, 82
Hpy188I	TCNGA	2 cut(s)	207, 281
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	2 cut(s)	51, 82
HpyCH4V	TGCA	2 cut(s)	155, 183
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	18, 88
Kzo9I	GATC	1 cut(s)	8
LguI	GCTCTTC	1 cut(s)	240
LpnPI	CCDG	4 cut(s)	59, 141, 169, 225
Lsp1109I	GCAGC	1 cut(s)	167
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	5 cut(s)	18, 71, 74, 175, 257
MluCI	AATT	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	4 cut(s)	84, 159, 201, 216
MseI	TTAA	1 cut(s)	35
MvnI	CGCG	1 cut(s)	120
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	2 cut(s)	18, 88
NspI	RCATGY	1 cut(s)	18
PceI	AGGCCT	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	122, 182
PspPI	GGNCC	2 cut(s)	44, 195
PstI	CTGCAG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	2 cut(s)	121, 181
Sau3AI	GATC	1 cut(s)	8
Sau96I	GGNCC	2 cut(s)	44, 195
SetI	ASST	6 cut(s)	75, 95, 153, 160, 170, 182
SfcI	CTRYAG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	195
Sse9I	AATT	1 cut(s)	126
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	2 cut(s)	120, 123
StuI	AGGCCT	1 cut(s)	211
TasI	AATT	1 cut(s)	126
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseI	GCWGC	1 cut(s)	180
TspDTI	ATGAA	2 cut(s)	39, 81
VpaK11BI	GGWCC	1 cut(s)	195
XceI	RCATGY	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.