Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

8332785 .. 8341750

Gene Structure 8966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCAAGGGATTGCTAGGGCTGTGAGATCATGCCATGAGTTACTCAAAGCTGCAGCTTTGGAGCATTCCCGCGGGAGACGAATTGCTTGGGTAGAAAGGTTAGGTTCAAGTTGTAAATGGGTTACCTCTCCAGCCCTAAAAGGATTGGAGAATGTGACTGTGGAAGATGTACTGATGAAAAAGAGCGAAGAAACTGGACCTTGGCTCTGGTGCCACACAAATGACACTGTTATTGATGCTATAAAAAATAACAAATTAATAACAGTGACATCTGACACAAACATTCTTCAGGCAATGCAACTTATGACAGTTATGGCATCCCTGAGTTCGTCGCGGAATTCCAACTCCTCCTGGACGCCGAAGCAGAACAAGCGGTTCGAGAAGGCCCTGGCTGTGTACGACAAGGACACGCAGGACCGGTGGCACAATGTGGCCAAGGCTGTGGGTGGAAAATCAGCTGAGGAAGTCAAGAGGCACTATGAGATTCTGGTGCAGGATCTCATGCATATAGAATCTGGTCAAGTCGCTATACCCAATTACAGGGCCACTGGAAGCAGCACTAGAGGAATTGCTGATTATGAACAGAGGTATCGAGCTTATGAAAAATCTGAAGATCTGATGAAGAAATGTAAAAACCATATGCAATATTGCCCTGTCATGCTGCCTATTAGTTTCTCCTGCTTCCTACCAAGTACCAAGTGTGAATGTGTTCCCAGTTTCAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

242

Amino Acids

27.41

Weight (kDa)

8.95

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	117 - 160	5.6e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	210
AccII	CGCG	2 cut(s)	72, 334
AciI	CCGC	4 cut(s)	70, 72, 334, 373
AclWI	GGATC	1 cut(s)	504
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	272, 630
AcyI	GRCGYC	1 cut(s)	356
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	3 cut(s)	171, 398, 694
AfiI	CCNNNNNNNGG	1 cut(s)	540
AgeI	ACCGGT	1 cut(s)	417
AgsI	TTSAA	2 cut(s)	108, 721
AjnI	CCWGG	2 cut(s)	350, 387
AluBI	AGCT	4 cut(s)	50, 56, 458, 596
AluI	AGCT	4 cut(s)	50, 56, 458, 596
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	504
AoxI	GGCC	3 cut(s)	384, 432, 543
ApeKI	GCWGC	4 cut(s)	50, 53, 555, 661
ApoI	RAATTY	1 cut(s)	337
AseI	ATTAAT	1 cut(s)	257
AsiGI	ACCGGT	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	708
AspS9I	GGNCC	4 cut(s)	197, 385, 415, 543
AvaII	GGWCC	2 cut(s)	197, 415
BaeI	ACNNNNGTAYC	2 cut(s)	572, 605
BalI	TGGCCA	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	37, 65, 567, 648
BciT130I	CCWGG	2 cut(s)	352, 389
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	15, 561
BfmI	CTRYAG	1 cut(s)	51
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	4 cut(s)	51, 54, 556, 662
BlsI	GCNGC	4 cut(s)	52, 55, 557, 663
Bme1390I	CCNGG	2 cut(s)	352, 389
Bme18I	GGWCC	2 cut(s)	197, 415
BmgT120I	GGNCC	4 cut(s)	197, 385, 415, 543
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	352, 389
BmrI	ACTGGG	1 cut(s)	708
BmsI	GCATC	2 cut(s)	226, 326
BmuI	ACTGGG	1 cut(s)	708
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	4 cut(s)	70, 200, 387, 435
BsaWI	WCCGGW	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	3 cut(s)	199, 553, 714
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	352, 389
BseDI	CCNNGG	4 cut(s)	70, 200, 387, 435
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	2 cut(s)	314, 450
BseNI	ACTGG	3 cut(s)	199, 553, 714
BseRI	GAGGAG	1 cut(s)	337
BseXI	GCAGC	4 cut(s)	37, 65, 567, 648
BsgI	GTGCAG	1 cut(s)	512
Bsh1236I	CGCG	2 cut(s)	72, 334
BshFI	GGCC	3 cut(s)	386, 434, 545
BshNI	GGYRCC	1 cut(s)	210
BshTI	ACCGGT	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	386, 434, 545
Bsp143I	GATC	3 cut(s)	26, 496, 613
BspACI	CCGC	4 cut(s)	70, 72, 334, 373
BspANI	GGCC	3 cut(s)	386, 434, 545
BspCNI	CTCAG	2 cut(s)	315, 451
BspFNI	CGCG	2 cut(s)	72, 334
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	3 cut(s)	199, 553, 714
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	4 cut(s)	70, 200, 387, 435
BssMI	GATC	3 cut(s)	26, 496, 613
BssNI	GRCGYC	1 cut(s)	356
BssT1I	CCWWGG	2 cut(s)	200, 435
Bst2UI	CCWGG	2 cut(s)	352, 389
Bst4CI	ACNGT	4 cut(s)	160, 229, 265, 310
BstACI	GRCGYC	1 cut(s)	356
BstDEI	CTNAG	2 cut(s)	323, 459
BstDSI	CCRYGG	1 cut(s)	70
BstEII	GGTNACC	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	317
BstFNI	CGCG	2 cut(s)	72, 334
BstKTI	GATC	3 cut(s)	29, 499, 616
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	26, 496, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	2 cut(s)	352, 389
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	350, 387
BstSFI	CTRYAG	1 cut(s)	51
BstUI	CGCG	2 cut(s)	72, 334
BstV1I	GCAGC	4 cut(s)	37, 65, 567, 648
BstX2I	RGATCY	2 cut(s)	496, 613
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	2 cut(s)	496, 613
BsuRI	GGCC	3 cut(s)	386, 434, 545
BtgI	CCRYGG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	3 cut(s)	225, 270, 546
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	4 cut(s)	197, 385, 415, 543
Cfr42I	CCGCGG	1 cut(s)	73
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	3 cut(s)	170, 397, 693
CspAI	ACCGGT	1 cut(s)	417
CviAII	CATG	4 cut(s)	30, 35, 502, 658
CviQI	GTAC	3 cut(s)	170, 397, 693
DdeI	CTNAG	2 cut(s)	323, 459
DpnI	GATC	3 cut(s)	28, 498, 615
DpnII	GATC	3 cut(s)	26, 496, 613
DraIII	CACNNNGTG	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	432
Eco130I	CCWWGG	2 cut(s)	200, 435
Eco47I	GGWCC	2 cut(s)	197, 415
Eco57I	CTGAAG	2 cut(s)	272, 630
Eco91I	GGTNACC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	385
EcoO65I	GGTNACC	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	350, 387
EcoT14I	CCWWGG	2 cut(s)	200, 435
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	2 cut(s)	200, 435
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	4 cut(s)	33, 38, 505, 661
FatI	CATG	4 cut(s)	29, 34, 501, 657
FauI	CCCGC	2 cut(s)	65, 77
FauNDI	CATATG	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	51, 54, 556, 662
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	4 cut(s)	51, 54, 556, 662
FspBI	CTAG	2 cut(s)	15, 561
GluI	GCNGC	4 cut(s)	51, 54, 556, 662
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	386, 434, 545
HapII	CCGG	1 cut(s)	418
HgaI	GACGC	1 cut(s)	364
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	4 cut(s)	33, 38, 505, 661
HinfI	GANTC	2 cut(s)	484, 512
HpaII	CCGG	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	274, 610, 618
Hpy188III	TCNNGA	2 cut(s)	379, 469
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	4 cut(s)	160, 229, 265, 310
HpyCH4V	TGCA	6 cut(s)	4, 53, 298, 493, 505, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	2 cut(s)	323, 459
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	4 cut(s)	33, 38, 505, 661
KspI	CCGCGG	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	26, 496, 613
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	4 cut(s)	37, 65, 567, 648
LweI	GCATC	2 cut(s)	226, 326
MaeI	CTAG	2 cut(s)	15, 561
MaeIII	GTNAC	4 cut(s)	39, 121, 154, 265
MalI	GATC	3 cut(s)	28, 498, 615
MboI	GATC	3 cut(s)	26, 496, 613
MboII	GAAGA	5 cut(s)	176, 200, 278, 623, 634
MflI	RGATCY	2 cut(s)	496, 613
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	5 cut(s)	81, 254, 337, 535, 567
MluNI	TGGCCA	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	6 cut(s)	136, 358, 454, 465, 557, 579
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	708
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	434
MspA1I	CMGCKG	2 cut(s)	72, 458
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	2 cut(s)	352, 389
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	2 cut(s)	352, 389
MvnI	CGCG	2 cut(s)	72, 334
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	3 cut(s)	26, 496, 613
NlaIII	CATG	4 cut(s)	33, 38, 505, 661
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	2 cut(s)	154, 265
NsiI	ATGCAT	1 cut(s)	507
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	484, 512
PfoI	TCCNGGA	1 cut(s)	350
PinAI	ACCGGT	1 cut(s)	417
PkrI	GCNGC	4 cut(s)	52, 55, 557, 663
PshBI	ATTAAT	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	350, 387
PspEI	GGTNACC	1 cut(s)	121
PspGI	CCWGG	2 cut(s)	350, 387
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	4 cut(s)	197, 385, 415, 543
PstI	CTGCAG	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	496, 613
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	3 cut(s)	171, 398, 694
RsaNI	GTAC	3 cut(s)	170, 397, 693
RseI	CAYNNNNRTG	1 cut(s)	219
SacII	CCGCGG	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	4 cut(s)	51, 54, 556, 662
Sau3AI	GATC	3 cut(s)	26, 496, 613
Sau96I	GGNCC	4 cut(s)	197, 385, 415, 543
ScrFI	CCNGG	2 cut(s)	352, 389
SetI	ASST	9 cut(s)	52, 58, 101, 106, 128, 202, 460, 590, 598
SfaNI	GCATC	2 cut(s)	226, 326
SfcI	CTRYAG	1 cut(s)	51
Sfr303I	CCGCGG	1 cut(s)	73
SgrBI	CCGCGG	1 cut(s)	73
SinI	GGWCC	2 cut(s)	197, 415
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	5 cut(s)	81, 254, 337, 535, 567
SsiI	CCGC	4 cut(s)	70, 72, 334, 373
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	2 cut(s)	15, 561
StyD4I	CCNGG	2 cut(s)	350, 387
StyI	CCWWGG	2 cut(s)	200, 435
TaaI	ACNGT	4 cut(s)	160, 229, 265, 310
TaqI	TCGA	2 cut(s)	378, 592
TasI	AATT	5 cut(s)	81, 254, 337, 535, 567
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	484, 512
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	3 cut(s)	232, 270, 553
TseFI	GTSAC	2 cut(s)	154, 265
TseI	GCWGC	4 cut(s)	50, 53, 555, 661
Tsp45I	GTSAC	2 cut(s)	154, 265
TspDTI	ATGAA	4 cut(s)	191, 594, 615, 635
TspRI	CASTG	3 cut(s)	232, 270, 553
VpaK11BI	GGWCC	2 cut(s)	197, 415
VspI	ATTAAT	1 cut(s)	257
XapI	RAATTY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	2 cut(s)	15, 561
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.