Rroxscaffold_5G00359810
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Forward (+)
40076970 .. 40077560
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359810.1

Sequence Viewer

Length: 318 bp
ATGTGGCCAAGATCAATCCCTAAGAATAAACAACAAAAAGCGATGTGGTCATTGATTGCTGGCCGACTTCCTGGAAGAACCTCAAATGATGTGAAAAACTATTGGAGTGCTCGGCGAAGGAGAAATATAGATTTGAACATCGTAAAAGATAAATCTCGAGAAATGTCAAAGACCACTAAAACAAAGCCTCGACCACGGACCGTCAAAAAAAGTTTACATATTCCCGGTGACAGAGCAGCAACCTCAAAGAATAGTAATATAAACATATCATTACCTCCATCTGTTTACTCTTCTCCAGTAAACGGACTTGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.97

Weight (kDa)

11.27

Isoelectric Point (pI)

72.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 5, 61
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 2 cut(s) 5, 61
ApeKI GCWGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 198
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 248
BccI CCATC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 72
BcnI CCSGG 1 cut(s) 225
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 2 cut(s) 72, 225
Bme18I GGWCC 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 72, 225
BpmI CTGGAG 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 248
BshFI GGCC 2 cut(s) 7, 63
BsiHKAI GWGCWC 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 302
BsnI GGCC 2 cut(s) 7, 63
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 11
BspANI GGCC 2 cut(s) 7, 63
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 194
BstKTI GATC 1 cut(s) 14
BstMBI GATC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 70, 223
BstV1I GCAGC 1 cut(s) 248
BsuRI GGCC 2 cut(s) 7, 63
BtgI CCRYGG 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 198
CpoI CGGWCCG 1 cut(s) 198
CspI CGGWCCG 1 cut(s) 198
CviJI RGCY 3 cut(s) 7, 63, 187
CviKI_1 RGCY 3 cut(s) 7, 63, 187
DdeI CTNAG 1 cut(s) 21
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
EaeI YGGCCR 2 cut(s) 5, 61
Eam1104I CTCTTC 1 cut(s) 295
EarI CTCTTC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 70
FaiI YATR 4 cut(s) 128, 219, 260, 266
Fnu4HI GCNGC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 2 cut(s) 7, 63
HapII CCGG 1 cut(s) 225
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 3 cut(s) 215, 286, 301
Hpy188III TCNNGA 2 cut(s) 156, 158
Hpy8I GTNNAC 3 cut(s) 215, 286, 301
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 21
Kzo9I GATC 1 cut(s) 11
LpnPI CCDG 5 cut(s) 45, 57, 84, 238, 309
Lsp1109I GCAGC 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 227
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 2 cut(s) 87, 282
MhlI GDGCHC 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 7
MluNI TGGCCA 1 cut(s) 7
MnlI CCTC 4 cut(s) 91, 198, 253, 285
Mox20I TGGCCA 1 cut(s) 7
MscI TGGCCA 1 cut(s) 7
Msp20I TGGCCA 1 cut(s) 7
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 72, 225
MvaI CCWGG 1 cut(s) 72
NciI CCSGG 1 cut(s) 225
NdeII GATC 1 cut(s) 11
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 227
PaeR7I CTCGAG 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PspPI GGNCC 1 cut(s) 198
Rsr2I CGGWCCG 1 cut(s) 198
RsrII CGGWCCG 1 cut(s) 198
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 11
Sau96I GGNCC 1 cut(s) 198
ScrFI CCNGG 2 cut(s) 72, 225
SduI GDGCHC 1 cut(s) 112
SetI ASST 3 cut(s) 83, 245, 277
Sfr274I CTCGAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 198
SlaI CTCGAG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 70, 223
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 157, 190
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 227
TspGWI ACGGA 2 cut(s) 211, 318
VpaK11BI GGWCC 1 cut(s) 198
XhoI CTCGAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.