Rroxscaffold_5G00339140
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
N/A
Physical Location & Seq
Forward (+)
7458903 .. 7461009
2107 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00339140.1

Sequence Viewer

Length: 156 bp
ATGACAGAGTTATCTCAGCTATGTCCTATGGCCCAAGAGAATTCACATGTTGCTTACAGAAAGACATCCACAAAATTTCCACTTTCATTAGATCAAAAAAATTGGTCAAAGGTAGAAAAGAAAGATTTTCAAAAGGCAATAAGACAACAATTTTAG

Protein Analysis

51

Amino Acids

6.05

Weight (kDa)

9.58

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 40, 74
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AoxI GGCC 1 cut(s) 30
ApoI RAATTY 2 cut(s) 40, 74
AspS9I GGNCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BseGI GGATG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 29
BshFI GGCC 1 cut(s) 32
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 91
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 28
BssMI GATC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 50
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 31
CviAII CATG 1 cut(s) 47
CviJI RGCY 2 cut(s) 19, 32
CviKI_1 RGCY 2 cut(s) 19, 32
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 40
FaeI CATG 1 cut(s) 50
FaiI YATR 3 cut(s) 22, 29, 48
FatI CATG 1 cut(s) 46
FokI GGATG 1 cut(s) 52
FspEI CC 9 cut(s) 14, 39, 46, 47, 82, 88, 93, 95, 119
HaeIII GGCC 1 cut(s) 32
Hin1II CATG 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 1 cut(s) 91
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MluCI AATT 4 cut(s) 40, 74, 100, 149
NdeII GATC 1 cut(s) 91
NlaIII CATG 1 cut(s) 50
NspI RCATGY 1 cut(s) 50
PciI ACATGT 1 cut(s) 46
PscI ACATGT 1 cut(s) 46
PspPI GGNCC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 31
SetI ASST 2 cut(s) 21, 114
SgeI CNNG 2 cut(s) 47, 59
Sse9I AATT 4 cut(s) 40, 74, 100, 149
TasI AATT 4 cut(s) 40, 74, 100, 149
TspDTI ATGAA 1 cut(s) 75
XapI RAATTY 2 cut(s) 40, 74
XceI RCATGY 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.