Rroxscaffold_3G00219490
MYB Family

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
N/A
Physical Location & Seq
Forward (+)
1590303 .. 1593854
3552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219490.1

Sequence Viewer

Length: 453 bp
ATGGGTGACGAAGTTGGGCTCCCTTGGCCAACTCGAAGAAGAAAAGAAGTTCAAGGCCATATTAAAGGCAAATCCTCCATCTCTTGGGAAGACCTTCGGGATGATATAATTGAGTCGTTTCCTAAGAAGAGCTGGAGAGAATTGGTTTTTGTCACAAGAGGTGACCGAAAAAGAAGCCTCGGAATTATAGAAAAAAAGAAGAAGAGTAAGTCAATGTGCAAAGCGTATGAACTTGATGTACATATTCTTTTTTTCAATGGAGATTTTAGAGAGAGCATCCAGGGACCCTTAATGCAGAACGTCTTGATGGATCATCAGGAAGGAGATCAACTTCCTTCATTGAACATAAGGCCCCAGTTTCTTTGCAATATATTTAGAAGAAGTAATCAACAGAAGAACAGCAGACCTCAATCTGTGAATAGAAATAAGCTCAGCAAATATATAGCTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID Myb_DNA-binding

Protein Analysis

150

Amino Acids

17.66

Weight (kDa)

10.05

Isoelectric Point (pI)

65.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 84
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 1 cut(s) 26
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 84
AgsI TTSAA 3 cut(s) 53, 256, 343
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 3 cut(s) 132, 430, 446
AluI AGCT 3 cut(s) 132, 430, 446
AlwI GGATC 1 cut(s) 318
AoxI GGCC 3 cut(s) 26, 55, 350
Asp700I GAANNNNTTC 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 284, 351
AsuHPI GGTGA 2 cut(s) 17, 173
AvaII GGWCC 1 cut(s) 284
BalI TGGCCA 1 cut(s) 28
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 96
BccI CCATC 2 cut(s) 86, 301
BciT130I CCWGG 1 cut(s) 281
BlpI GCTNAGC 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 2 cut(s) 284, 351
BmiI GGNNCC 4 cut(s) 20, 285, 286, 353
BmrFI CCNGG 1 cut(s) 281
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 154
Bpu1102I GCTNAGC 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 23, 178, 280
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 3 cut(s) 23, 178, 280
BseGI GGATG 2 cut(s) 106, 276
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 445
BseNI ACTGG 1 cut(s) 355
BshFI GGCC 3 cut(s) 28, 57, 352
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 3 cut(s) 28, 57, 352
Bsp1286I GDGCHC 1 cut(s) 21
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 310, 325
Bsp1720I GCTNAGC 1 cut(s) 431
BspANI GGCC 3 cut(s) 28, 57, 352
BspCNI CTCAG 1 cut(s) 444
BspLI GGNNCC 4 cut(s) 20, 285, 286, 353
BspPI GGATC 1 cut(s) 318
BspQI GCTCTTC 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 23, 178, 280
BssMI GATC 2 cut(s) 310, 325
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 281
Bst6I CTCTTC 2 cut(s) 122, 197
BstAUI TGTACA 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 123, 431
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 2 cut(s) 106, 276
BstKTI GATC 2 cut(s) 313, 328
BstMBI GATC 2 cut(s) 310, 325
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 281
BstPI GGTNACC 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 3 cut(s) 28, 57, 352
BtsCI GGATG 2 cut(s) 106, 276
Cfr13I GGNCC 2 cut(s) 284, 351
Csp6I GTAC 1 cut(s) 239
CviJI RGCY 8 cut(s) 19, 28, 57, 132, 177, 352, 430, 446
CviKI_1 RGCY 8 cut(s) 19, 28, 57, 132, 177, 352, 430, 446
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 2 cut(s) 123, 431
DpnI GATC 2 cut(s) 312, 327
DpnII GATC 2 cut(s) 310, 325
EaeI YGGCCR 1 cut(s) 26
Eam1104I CTCTTC 2 cut(s) 122, 197
EarI CTCTTC 2 cut(s) 122, 197
Eco130I CCWWGG 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 161
EcoO109I RGGNCCY 2 cut(s) 284, 351
EcoO65I GGTNACC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 23
FaiI YATR 9 cut(s) 60, 107, 188, 228, 243, 347, 371, 441, 443
FaqI GGGAC 1 cut(s) 297
FokI GGATG 2 cut(s) 113, 263
FriOI GRGCYC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 3 cut(s) 28, 57, 352
HinfI GANTC 1 cut(s) 113
HphI GGTGA 2 cut(s) 17, 173
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 3 cut(s) 98, 304, 317
HpyAV CCTTC 3 cut(s) 104, 314, 345
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 219, 295, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 123, 431
HpySE526I ACGT 1 cut(s) 300
KflI GGGWCCC 1 cut(s) 284
Kzo9I GATC 2 cut(s) 310, 325
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 118, 266, 293, 302, 368
LweI GCATC 1 cut(s) 285
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 3 cut(s) 5, 151, 161
MalI GATC 2 cut(s) 312, 327
MboI GATC 2 cut(s) 310, 325
MboII GAAGA 8 cut(s) 48, 51, 101, 139, 211, 214, 390, 406
MhlI GDGCHC 1 cut(s) 21
MlsI TGGCCA 1 cut(s) 28
MluCI AATT 3 cut(s) 108, 140, 183
MluNI TGGCCA 1 cut(s) 28
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 4 cut(s) 85, 152, 188, 417
Mox20I TGGCCA 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 93
MscI TGGCCA 1 cut(s) 28
MseI TTAA 2 cut(s) 63, 290
Msp20I TGGCCA 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 2 cut(s) 310, 325
NlaIV GGNNCC 4 cut(s) 20, 285, 286, 353
NmuCI GTSAC 3 cut(s) 5, 151, 161
PciSI GCTCTTC 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 84
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 279
PspEI GGTNACC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 4 cut(s) 20, 285, 286, 353
PspPI GGNCC 2 cut(s) 284, 351
PspPPI RGGWCCY 1 cut(s) 284
PsrI GAACNNNNNNTAC 2 cut(s) 222, 254
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 2 cut(s) 63, 290
Sau3AI GATC 2 cut(s) 310, 325
Sau96I GGNCC 2 cut(s) 284, 351
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 1 cut(s) 21
SetI ASST 7 cut(s) 96, 134, 163, 303, 409, 432, 448
SfaNI GCATC 1 cut(s) 285
SinI GGWCC 1 cut(s) 284
Sse9I AATT 3 cut(s) 108, 140, 183
StyD4I CCNGG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 23
TaiI ACGT 1 cut(s) 303
TaqI TCGA 2 cut(s) 34, 448
TaqII GACCGA 1 cut(s) 180
TasI AATT 3 cut(s) 108, 140, 183
TatI WGTACW 1 cut(s) 238
Tru1I TTAA 2 cut(s) 63, 290
Tru9I TTAA 2 cut(s) 63, 290
TseFI GTSAC 3 cut(s) 5, 151, 161
Tsp45I GTSAC 3 cut(s) 5, 151, 161
TspDTI ATGAA 2 cut(s) 243, 327
Van91I CCANNNNNTGG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.