Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

24828090 .. 24832367

Gene Structure 4278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTGGAGATGAGGATGATCGATGATGTTGAGTTGATGATGGAGAAAAGTCTGAAGAGATGTGGGAAGAGTGTGAGGCTTAGGTGGATGAATTATCTGAGGCCTGGTATCGTTAGAGGCAACATTGCAGAAGATGAAGAAGAGCTCATCATCAGACTCCACAAACTCTTGGGCAACAGATGGTCACTGATAGCAGGAAGGATCCCAGGGCGAACTGATAATGAAATCAAAAACTACTGGAATTCCTCCTTAAAGAGGAAGCTACAACAACAAAACCACTTGGAAGTGCCTAGAAATGAGGAGATCAGGAAGGACTTGTCATCCTCTGCTGCGGTTGCCGCTGCCGCTGAGAAGAACCCACATTTGACCGGAAACAATGTCAATGAAGACGAAGATTATGATCAGCATCATGATGTTGACTTTGGAGTTGGAATTGAGTTTGAAGCAACTGATAATAATAACGGCACTGGTGATGATGAACATCTGAGGGATGACCTTTGGTGGAACAACTTCATAATGGATCTGAATGATATCCAACTCGATGCATCTGAATTTCGACCCGACTTCCCCGAGAATAGGGAATCTAAGGTCAAAACAAAGAAATCAACAAAGTCGTTCTATTCCACCCGGCTAGCTCGTTCAGAAGATCGAAGACCCCAACTGATCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

223

Amino Acids

26.08

Weight (kDa)

5.4

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	40 - 82	3.3e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	44 - 92	3.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	332, 339, 345
AclWI	GGATC	3 cut(s)	196, 209, 528
AcsI	RAATTY	2 cut(s)	241, 551
AcuI	CTGAAG	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	255, 576
AgsI	TTSAA	1 cut(s)	443
AjnI	CCWGG	2 cut(s)	103, 205
AluBI	AGCT	3 cut(s)	145, 262, 635
AluI	AGCT	3 cut(s)	145, 262, 635
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	3 cut(s)	196, 209, 528
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	329, 341
ApoI	RAATTY	2 cut(s)	241, 551
Asp700I	GAANNNNTTC	1 cut(s)	509
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	1 cut(s)	482
AsuNHI	GCTAGC	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	569
BamHI	GGATCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	147
BbsI	GAAGAC	2 cut(s)	393, 658
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	316, 328
BccI	CCATC	2 cut(s)	34, 174
BceAI	ACGGC	1 cut(s)	478
BciT130I	CCWGG	2 cut(s)	105, 207
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	628
BfaI	CTAG	2 cut(s)	291, 632
BisI	GCNGC	4 cut(s)	330, 339, 342, 345
BlsI	GCNGC	4 cut(s)	331, 340, 343, 346
Bme1390I	CCNGG	3 cut(s)	105, 207, 628
BmeT110I	CYCGRG	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	3 cut(s)	105, 207, 628
BmsI	GCATC	3 cut(s)	415, 532, 554
BmtI	GCTAGC	1 cut(s)	635
BpiI	GAAGAC	2 cut(s)	393, 658
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	628
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	3 cut(s)	399, 405, 480
BsaJI	CCNNGG	2 cut(s)	205, 206
BsaWI	WCCGGW	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 576
Bse1I	ACTGG	2 cut(s)	242, 472
Bse3DI	GCAATG	1 cut(s)	123
Bse8I	GATNNNNATC	3 cut(s)	399, 405, 480
BseBI	CCWGG	2 cut(s)	105, 207
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	205, 206
BseGI	GGATG	4 cut(s)	21, 93, 320, 496
BseJI	GATNNNNATC	3 cut(s)	399, 405, 480
BseLI	CCNNNNNNNGG	2 cut(s)	255, 576
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	3 cut(s)	89, 339, 476
BseNI	ACTGG	2 cut(s)	242, 472
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	316, 328
BshFI	GGCC	1 cut(s)	103
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	369, 628
BslI	CCNNNNNNNGG	2 cut(s)	255, 576
BsnI	GGCC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	7 cut(s)	18, 201, 303, 400, 520, 646, 663
BspACI	CCGC	3 cut(s)	332, 339, 345
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	3 cut(s)	90, 340, 477
BspDI	ATCGAT	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	203
BspOI	GCTAGC	1 cut(s)	635
BspPI	GGATC	3 cut(s)	196, 209, 528
BspQI	GCTCTTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	242, 472
BssECI	CCNNGG	2 cut(s)	205, 206
BssMI	GATC	7 cut(s)	18, 201, 303, 400, 520, 646, 663
Bst2UI	CCWGG	2 cut(s)	105, 207
Bst6I	CTCTTC	3 cut(s)	50, 62, 135
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	5 cut(s)	80, 98, 348, 485, 585
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	4 cut(s)	21, 93, 320, 496
BstKTI	GATC	7 cut(s)	21, 204, 306, 403, 523, 649, 666
BstMBI	GATC	7 cut(s)	18, 201, 303, 400, 520, 646, 663
BstMWI	GCNNNNNNNGC	3 cut(s)	335, 338, 344
BstNI	CCWGG	2 cut(s)	105, 207
BstSCI	CCNGG	3 cut(s)	103, 205, 626
BstV1I	GCAGC	2 cut(s)	316, 328
BstV2I	GAAGAC	2 cut(s)	393, 658
BstX2I	RGATCY	2 cut(s)	201, 520
BstYI	RGATCY	2 cut(s)	201, 520
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	103
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	4 cut(s)	21, 93, 320, 496
BtsIMutI	CAGTG	2 cut(s)	185, 465
Cac8I	GCNNGC	1 cut(s)	633
CciI	TCATGA	1 cut(s)	409
ClaI	ATCGAT	1 cut(s)	21
CviAII	CATG	1 cut(s)	410
CviJI	RGCY	6 cut(s)	79, 103, 145, 262, 631, 635
CviKI_1	RGCY	6 cut(s)	79, 103, 145, 262, 631, 635
DdeI	CTNAG	5 cut(s)	80, 98, 348, 485, 585
DpnI	GATC	7 cut(s)	20, 203, 305, 402, 522, 648, 665
DpnII	GATC	7 cut(s)	18, 201, 303, 400, 520, 646, 663
Eam1104I	CTCTTC	3 cut(s)	50, 62, 135
EarI	CTCTTC	3 cut(s)	50, 62, 135
Ecl136II	GAGCTC	1 cut(s)	145
Eco147I	AGGCCT	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	147
Eco32I	GATATC	1 cut(s)	532
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	103, 205
EcoRV	GATATC	1 cut(s)	532
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	147
FaeI	CATG	1 cut(s)	413
FaiI	YATR	3 cut(s)	399, 411, 515
FatI	CATG	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	4 cut(s)	330, 339, 342, 345
FokI	GGATG	4 cut(s)	28, 100, 307, 503
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	4 cut(s)	330, 339, 342, 345
FspBI	CTAG	2 cut(s)	291, 632
GluI	GCNGC	4 cut(s)	330, 339, 342, 345
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	2 cut(s)	369, 628
Hin1II	CATG	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	2 cut(s)	156, 581
HpaII	CCGG	2 cut(s)	369, 628
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	7 cut(s)	54, 99, 155, 486, 525, 550, 643
Hpy188III	TCNNGA	2 cut(s)	307, 410
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	192, 304
HpyCH4V	TGCA	2 cut(s)	128, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	335, 338, 344
HpyF3I	CTNAG	5 cut(s)	80, 98, 348, 485, 585
Hsp92II	CATG	1 cut(s)	413
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	7 cut(s)	18, 201, 303, 400, 520, 646, 663
LguI	GCTCTTC	1 cut(s)	135
Lsp1109I	GCAGC	2 cut(s)	316, 328
LweI	GCATC	3 cut(s)	415, 532, 554
MaeI	CTAG	2 cut(s)	291, 632
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	7 cut(s)	20, 203, 305, 402, 522, 648, 665
MboI	GATC	7 cut(s)	18, 201, 303, 400, 520, 646, 663
MflI	RGATCY	2 cut(s)	201, 520
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	4 cut(s)	91, 241, 432, 551
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	2 cut(s)	409, 559
MnlI	CCTC	9 cut(s)	6, 69, 93, 110, 249, 256, 292, 334, 480
Mph1103I	ATGCAT	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	411
MspA1I	CMGCKG	2 cut(s)	341, 347
MspI	CCGG	2 cut(s)	369, 628
MspR9I	CCNGG	3 cut(s)	105, 207, 628
MvaI	CCWGG	2 cut(s)	105, 207
MwoI	GCNNNNNNNGC	3 cut(s)	335, 338, 344
NciI	CCSGG	1 cut(s)	628
NdeII	GATC	7 cut(s)	18, 201, 303, 400, 520, 646, 663
NheI	GCTAGC	1 cut(s)	631
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	183
NsiI	ATGCAT	1 cut(s)	547
PagI	TCATGA	1 cut(s)	409
PasI	CCCWGGG	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	4 cut(s)	331, 340, 343, 346
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	103, 205
PspGI	CCWGG	2 cut(s)	103, 205
PspN4I	GGNNCC	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	201, 520
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	4 cut(s)	330, 339, 342, 345
Sau3AI	GATC	7 cut(s)	18, 201, 303, 400, 520, 646, 663
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	3 cut(s)	105, 207, 628
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	6 cut(s)	86, 147, 264, 498, 591, 637
SfaNI	GCATC	3 cut(s)	415, 532, 554
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	4 cut(s)	91, 241, 432, 551
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	3 cut(s)	332, 339, 345
SspMI	CTAG	2 cut(s)	291, 632
SstI	GAGCTC	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	3 cut(s)	103, 205, 626
TaqI	TCGA	5 cut(s)	21, 540, 556, 649, 666
TasI	AATT	4 cut(s)	91, 241, 432, 551
TauI	GCSGC	2 cut(s)	341, 347
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	2 cut(s)	192, 472
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	2 cut(s)	329, 341
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	6 cut(s)	104, 150, 237, 399, 492, 502
TspRI	CASTG	2 cut(s)	192, 472
XagI	CCTNNNNNAGG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	241, 551
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	2 cut(s)	291, 632
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.