Rroxscaffold_1G00016310
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
N/A
Physical Location & Seq
Forward (+)
20329479 .. 20329733
255 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00016310.1

Sequence Viewer

Length: 255 bp
ATGTCCACCGTCGTCACCACCACCCACCCCCATCGGACCCGTGATGAGGCTCACTCCCTCATCCTCGCCTATCGCGACCGCCGGTTCGCTCTCTCGTCGTACCAATCGAAATCCGCCGATTGGAAGCACGTCGCCGCCGCCACCGCTTCCCCGGCTCCCTCCTCGCTCCCAAGACCGCGTTGCGGTGCTATCATAAGCCTAGTCGTGGGCTTTGTTTCATCTCATGGATCAAATGGAATCCGACCCGGATCTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

8.99

Weight (kDa)

10.84

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 75, 178
AciI CCGC 7 cut(s) 79, 114, 135, 138, 144, 176, 183
AclWI GGATC 1 cut(s) 235
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 4 cut(s) 46, 120, 182, 205
AjiI CACGTC 1 cut(s) 130
AlwI GGATC 1 cut(s) 235
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 2 cut(s) 152, 246
AsuHPI GGTGA 1 cut(s) 7
AvaII GGWCC 1 cut(s) 36
BccI CCATC 1 cut(s) 39
BcnI CCSGG 2 cut(s) 152, 246
BfaI CTAG 1 cut(s) 200
BisI GCNGC 2 cut(s) 135, 138
BlsI GCNGC 2 cut(s) 136, 139
Bme1390I CCNGG 2 cut(s) 152, 246
Bme18I GGWCC 1 cut(s) 36
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 38, 156
BmrFI CCNGG 2 cut(s) 152, 246
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpuMI CCSGG 2 cut(s) 152, 246
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 120, 182, 205
Bse118I RCCGGY 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 4 cut(s) 46, 120, 182, 205
BseRI GAGGAG 1 cut(s) 151
Bsh1236I CGCG 2 cut(s) 75, 178
Bsh1285I CGRYCG 1 cut(s) 79
BsiEI CGRYCG 1 cut(s) 79
BsiSI CCGG 3 cut(s) 82, 152, 246
BslI CCNNNNNNNGG 4 cut(s) 46, 120, 182, 205
Bsp143I GATC 2 cut(s) 227, 248
Bsp68I TCGCGA 1 cut(s) 75
BspACI CCGC 7 cut(s) 79, 114, 135, 138, 144, 176, 183
BspFNI CGCG 2 cut(s) 75, 178
BspLI GGNNCC 2 cut(s) 38, 156
BspPI GGATC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 2 cut(s) 227, 248
Bst4CI ACNGT 1 cut(s) 10
BstF5I GGATG 1 cut(s) 60
BstFNI CGCG 2 cut(s) 75, 178
BstKTI GATC 2 cut(s) 230, 251
BstMBI GATC 2 cut(s) 227, 248
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 143, 152
BstSCI CCNGG 2 cut(s) 150, 244
BstUI CGCG 2 cut(s) 75, 178
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 1 cut(s) 60
BtuMI TCGCGA 1 cut(s) 75
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 100
CviAII CATG 1 cut(s) 224
CviJI RGCY 4 cut(s) 50, 155, 198, 210
CviKI_1 RGCY 4 cut(s) 50, 155, 198, 210
CviQI GTAC 1 cut(s) 100
DpnI GATC 2 cut(s) 229, 250
DpnII GATC 2 cut(s) 227, 248
EciI GGCGGA 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 36
FaeI CATG 1 cut(s) 227
FaiI YATR 2 cut(s) 194, 225
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 135, 138
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 135, 138
FspBI CTAG 1 cut(s) 200
GluI GCNGC 2 cut(s) 135, 138
HapII CCGG 3 cut(s) 82, 152, 246
Hin1II CATG 1 cut(s) 227
HinfI GANTC 1 cut(s) 237
HpaII CCGG 3 cut(s) 82, 152, 246
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 36, 242
Hpy188III TCNNGA 2 cut(s) 74, 252
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 14, 100, 134
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 152
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 2 cut(s) 227, 248
LmnI GCTCC 2 cut(s) 160, 171
LpnPI CCDG 2 cut(s) 95, 165
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 229, 250
MboI GATC 2 cut(s) 227, 248
MflI RGATCY 1 cut(s) 248
MnlI CCTC 5 cut(s) 40, 68, 74, 169, 172
MspI CCGG 3 cut(s) 82, 152, 246
MspR9I CCNGG 2 cut(s) 152, 246
MvnI CGCG 2 cut(s) 75, 178
MwoI GCNNNNNNNGC 2 cut(s) 143, 152
NciI CCSGG 2 cut(s) 152, 246
NdeII GATC 2 cut(s) 227, 248
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 2 cut(s) 38, 156
NmuCI GTSAC 1 cut(s) 13
NruI TCGCGA 1 cut(s) 75
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 104
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 2 cut(s) 136, 139
PspN4I GGNNCC 2 cut(s) 38, 156
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 248
RruI TCGCGA 1 cut(s) 75
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SatI GCNGC 2 cut(s) 135, 138
Sau3AI GATC 2 cut(s) 227, 248
Sau96I GGNCC 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 152, 246
SetI ASST 1 cut(s) 132
SinI GGWCC 1 cut(s) 36
SsiI CCGC 7 cut(s) 79, 114, 135, 138, 144, 176, 183
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 150, 244
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 107
TauI GCSGC 2 cut(s) 137, 140
TfiI GAWTC 1 cut(s) 237
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 36
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.