Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000343.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

34764 .. 36138

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000343.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ctgattcaagaagctaaaaaccttgaatccgaatacaaaaccttgaagcctttctttcctccacctcataccttgaagaactttatcccaggagtccagaaccggcagccccacctcaagaaccggccggaaaaccaccgaaccggccggaaaaccaccgaaccggccaccggaagctctatacaactagcagcaaatattccaccggtttaccatcttccggacctccgatttccaccaaattttggttcagaagcctctcaagtcaaagatgctggaacaggaagaaaacgtgagaaaaccggtctaaaagtcaacggtcaacgaccggtcaacgccggtcaacctttttccggcaacttttccagtcactttccggcgtcttttccggtcacttttcgggccactttccggcaacccccgtcactttccggtgactttttccggtctgctacagtaacttcccgtgctacagtaccttccgttgctacagtgcttccatttttaaggatgagtaacctgaacaaattggactttgctccattgggaacaactggctttggatatcacaggtgggttcgtgatatccgccagcatctcaaagctgtaggaatcttggatatgattctcgagcctagtcaggacgtgataactgttgagcaagctaaagctttgcaagcaaatagagcagccttagaggcaaataaggcgaaagccatcatcctaatgactcatcatatgaatgattcaccttccccgtctctgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

256

Amino Acids

28.31

Weight (kDa)

10.37

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	1 cut(s)	589
AcoI	YGGCCR	3 cut(s)	125, 145, 165
AcsI	RAATTY	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	5 cut(s)	170, 220, 245, 353, 411
AgeI	ACCGGT	3 cut(s)	205, 302, 328
AgsI	TTSAA	4 cut(s)	8, 26, 46, 76
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	88
AjuI	GAANNNNNNNTTGG	2 cut(s)	232, 264
AluBI	AGCT	5 cut(s)	14, 177, 605, 665, 671
AluI	AGCT	5 cut(s)	14, 177, 605, 665, 671
Alw26I	GTCTC	1 cut(s)	765
Ama87I	CYCGRG	1 cut(s)	629
Aor13HI	TCCGGA	1 cut(s)	220
AoxI	GGCC	4 cut(s)	125, 145, 165, 402
ApeKI	GCWGC	3 cut(s)	106, 191, 689
ApoI	RAATTY	1 cut(s)	241
AsiGI	ACCGGT	3 cut(s)	205, 302, 328
Asp700I	GAANNNNTTC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	223, 402
AsuHPI	GGTGA	2 cut(s)	446, 741
AvaI	CYCGRG	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	118, 203, 701
BccI	CCATC	2 cut(s)	222, 725
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	765
BfaI	CTAG	2 cut(s)	188, 636
BfmI	CTRYAG	4 cut(s)	453, 471, 489, 606
BglI	GCCNNNNNGGC	1 cut(s)	698
BisI	GCNGC	3 cut(s)	107, 192, 690
BlsI	GCNGC	3 cut(s)	108, 193, 691
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	629
BmgBI	CACGTC	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	223, 402
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	262, 604
BpuEI	CTTGAG	2 cut(s)	101, 246
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	8 cut(s)	170, 205, 220, 302, 328, 388, 431, 444
Bsc4I	CCNNNNNNNGG	5 cut(s)	170, 220, 245, 353, 411
Bse118I	RCCGGY	8 cut(s)	102, 123, 143, 163, 205, 302, 328, 338
Bse1I	ACTGG	2 cut(s)	366, 559
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	516, 720
BseLI	CCNNNNNNNGG	5 cut(s)	170, 220, 245, 353, 411
BseNI	ACTGG	2 cut(s)	366, 559
BseX3I	CGGCCG	2 cut(s)	125, 145
BseXI	GCAGC	3 cut(s)	118, 203, 701
Bsh1285I	CGRYCG	3 cut(s)	128, 148, 329
BshFI	GGCC	4 cut(s)	127, 147, 167, 404
BshTI	ACCGGT	3 cut(s)	205, 302, 328
BsiEI	CGRYCG	3 cut(s)	128, 148, 329
BsiHKCI	CYCGRG	1 cut(s)	629
BslI	CCNNNNNNNGG	5 cut(s)	170, 220, 245, 353, 411
BsmAI	GTCTC	1 cut(s)	765
BsmBI	CGTCTC	1 cut(s)	765
BsnI	GGCC	4 cut(s)	127, 147, 167, 404
BsoBI	CYCGRG	1 cut(s)	629
Bsp13I	TCCGGA	1 cut(s)	220
BspACI	CCGC	1 cut(s)	589
BspANI	GGCC	4 cut(s)	127, 147, 167, 404
BspEI	TCCGGA	1 cut(s)	220
BsrFI	RCCGGY	8 cut(s)	102, 123, 143, 163, 205, 302, 328, 338
BsrI	ACTGG	2 cut(s)	366, 559
BssAI	RCCGGY	8 cut(s)	102, 123, 143, 163, 205, 302, 328, 338
BssECI	CCNNGG	1 cut(s)	88
BssNI	GRCGYC	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	5 cut(s)	320, 457, 475, 493, 655
BstACI	GRCGYC	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	593, 663, 678
BstDEI	CTNAG	1 cut(s)	694
BstF5I	GGATG	2 cut(s)	516, 720
BstMAI	GTCTC	1 cut(s)	765
BstMCI	CGRYCG	3 cut(s)	128, 148, 329
BstMWI	GCNNNNNNNGC	4 cut(s)	677, 686, 698, 707
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	4 cut(s)	453, 471, 489, 606
BstV1I	GCAGC	3 cut(s)	118, 203, 701
BstZI	CGGCCG	2 cut(s)	125, 145
BsuRI	GGCC	4 cut(s)	127, 147, 167, 404
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	2 cut(s)	516, 720
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	3 cut(s)	593, 663, 678
Cfr10I	RCCGGY	8 cut(s)	102, 123, 143, 163, 205, 302, 328, 338
Cfr13I	GGNCC	2 cut(s)	223, 402
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	476
CspAI	ACCGGT	3 cut(s)	205, 302, 328
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	1 cut(s)	694
EaeI	YGGCCR	3 cut(s)	125, 145, 165
EagI	CGGCCG	2 cut(s)	125, 145
EciI	GGCGGA	1 cut(s)	578
EclXI	CGGCCG	2 cut(s)	125, 145
Eco32I	GATATC	2 cut(s)	566, 586
Eco47I	GGWCC	1 cut(s)	223
Eco52I	CGGCCG	2 cut(s)	125, 145
Eco88I	CYCGRG	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	88
EcoRV	GATATC	2 cut(s)	566, 586
Esp3I	CGTCTC	1 cut(s)	765
FaiI	YATR	5 cut(s)	69, 182, 623, 738, 740
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FauNDI	CATATG	1 cut(s)	738
Fnu4HI	GCNGC	3 cut(s)	107, 192, 690
FokI	GGATG	2 cut(s)	523, 707
Fsp4HI	GCNGC	3 cut(s)	107, 192, 690
FspBI	CTAG	2 cut(s)	188, 636
GluI	GCNGC	3 cut(s)	107, 192, 690
HaeIII	GGCC	4 cut(s)	127, 147, 167, 404
HgaI	GACGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	380
HincII	GTYRAC	4 cut(s)	316, 323, 334, 344
HindII	GTYRAC	4 cut(s)	316, 323, 334, 344
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	7 cut(s)	4, 26, 93, 612, 625, 730, 746
HphI	GGTGA	2 cut(s)	446, 741
Hpy166II	GTNNAC	5 cut(s)	211, 316, 323, 334, 344
Hpy188I	TCNGA	3 cut(s)	31, 230, 253
Hpy188III	TCNNGA	7 cut(s)	8, 97, 118, 221, 581, 629, 641
Hpy8I	GTNNAC	5 cut(s)	211, 316, 323, 334, 344
HpyAV	CCTTC	2 cut(s)	489, 762
HpyCH4III	ACNGT	5 cut(s)	320, 457, 475, 493, 655
HpyCH4IV	ACGT	2 cut(s)	292, 645
HpyCH4V	TGCA	2 cut(s)	676, 766
HpyF10VI	GCNNNNNNNGC	4 cut(s)	677, 686, 698, 707
HpyF3I	CTNAG	1 cut(s)	694
HpySE526I	ACGT	2 cut(s)	292, 645
Hsp92I	GRCGYC	1 cut(s)	380
Kpn2I	TCCGGA	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	3 cut(s)	118, 203, 701
LweI	GCATC	2 cut(s)	262, 604
MaeI	CTAG	2 cut(s)	188, 636
MaeII	ACGT	2 cut(s)	292, 645
MaeIII	GTNAC	6 cut(s)	368, 391, 423, 434, 457, 515
MboII	GAAGA	3 cut(s)	88, 209, 297
MluCI	AATT	2 cut(s)	241, 527
MlyI	GAGTC	2 cut(s)	102, 724
MnlI	CCTC	6 cut(s)	69, 75, 125, 236, 268, 691
MroI	TCCGGA	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	506
MslI	CAYNNNNRTG	2 cut(s)	725, 741
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	4 cut(s)	677, 686, 698, 707
NdeI	CATATG	1 cut(s)	738
NmuCI	GTSAC	4 cut(s)	368, 391, 423, 434
PaeR7I	CTCGAG	1 cut(s)	629
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	5 cut(s)	4, 26, 612, 625, 746
PflMI	CCANNNNNTGG	1 cut(s)	245
PinAI	ACCGGT	3 cut(s)	205, 302, 328
PkrI	GCNGC	3 cut(s)	108, 193, 691
PleI	GAGTC	2 cut(s)	101, 724
PpsI	GAGTC	2 cut(s)	101, 724
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	223, 402
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	2 cut(s)	725, 741
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	3 cut(s)	107, 192, 690
Sau96I	GGNCC	2 cut(s)	223, 402
SchI	GAGTC	2 cut(s)	102, 724
ScrFI	CCNGG	1 cut(s)	90
SfaNI	GCATC	2 cut(s)	262, 604
SfcI	CTRYAG	4 cut(s)	453, 471, 489, 606
Sfr274I	CTCGAG	1 cut(s)	629
SinI	GGWCC	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	629
SmiMI	CAYNNNNRTG	2 cut(s)	725, 741
SmlI	CTYRAG	3 cut(s)	116, 261, 629
SmoI	CTYRAG	3 cut(s)	116, 261, 629
Sse9I	AATT	2 cut(s)	241, 527
SsiI	CCGC	1 cut(s)	589
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	188, 636
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	5 cut(s)	320, 457, 475, 493, 655
TaiI	ACGT	2 cut(s)	295, 648
TaqI	TCGA	1 cut(s)	630
TasI	AATT	2 cut(s)	241, 527
TfiI	GAWTC	5 cut(s)	4, 26, 612, 625, 746
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	4 cut(s)	368, 391, 423, 434
TseI	GCWGC	3 cut(s)	106, 191, 689
Tsp45I	GTSAC	4 cut(s)	368, 391, 423, 434
TspDTI	ATGAA	1 cut(s)	755
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	1 cut(s)	498
Van91I	CCANNNNNTGG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	241
XhoI	CTCGAG	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	2 cut(s)	188, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.