Rmu_sc0029919.1_g000001
MYB Family

TSL-kinase interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029919.1
N/A
Physical Location & Seq
Forward (+)
1 .. 746
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029919.1_g000001.1.cds

Sequence Viewer

Length: 391 bp
gtggtctttgctggaaaagtatagctgcaaagcatcaaagcttcacttgaagccccgacggtttaagatttttatggaagcattggaacaccaactccttaaagaccggaagaagactgtcaggaaacggccttctcagggggaaaactgccctcctgaggctcccagcactgtctcaaatcagagtagaccatcagaacatgatcgtccagttaaacttgttctcgttgagagtcacaatattcagaaatcaggacctggaaaagcatcattaaagcgcagtggaagcataggtgttaatcgtggcaacaaaggagatgcaagtaccatgaaacctgctagacaacgacgtaaaccaggtgatctttctgtttgtatacctactttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

129

Amino Acids

14.45

Weight (kDa)

10.48

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 344
AccI GTMKAC 2 cut(s) 188, 377
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 138, 158
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 2 cut(s) 257, 356
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
AluBI AGCT 2 cut(s) 25, 41
AluI AGCT 2 cut(s) 25, 41
Alw26I GTCTC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 258
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 372
AvaII GGWCC 1 cut(s) 255
AxyI CCTNAGG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 12
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 144
BciT130I CCWGG 2 cut(s) 259, 358
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 344
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 259, 358
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 259, 358
BmsI GCATC 3 cut(s) 42, 276, 308
BpiI GAAGAC 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 158
Bse1I ACTGG 1 cut(s) 210
Bse21I CCTNAGG 1 cut(s) 157
BseBI CCWGG 2 cut(s) 259, 358
BseLI CCNNNNNNNGG 2 cut(s) 138, 158
BseMII CTCAG 2 cut(s) 148, 150
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 12
BseYI CCCAGC 1 cut(s) 165
BshFI GGCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 2 cut(s) 138, 158
BsmAI GTCTC 1 cut(s) 179
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 203, 362
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 2 cut(s) 149, 149
BspLI GGNNCC 1 cut(s) 163
BspMI ACCTGC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 210
BssMI GATC 2 cut(s) 203, 362
BssNAI GTATAC 1 cut(s) 378
Bst1107I GTATAC 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 259, 358
Bst4CI ACNGT 3 cut(s) 61, 119, 173
BstDEI CTNAG 2 cut(s) 136, 157
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 2 cut(s) 206, 365
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 203, 362
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 2 cut(s) 259, 358
BstSCI CCNGG 2 cut(s) 257, 356
BstV1I GCAGC 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 120
BstZ17I GTATAC 1 cut(s) 378
Bsu36I CCTNAGG 1 cut(s) 157
BsuRI GGCC 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 169, 287
BveI ACCTGC 1 cut(s) 344
CaiI CAGNNNCTG 1 cut(s) 258
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 255
CsiI ACCWGGT 1 cut(s) 356
Csp6I GTAC 1 cut(s) 325
CviAII CATG 2 cut(s) 201, 329
CviJI RGCY 5 cut(s) 25, 41, 53, 131, 162
CviKI_1 RGCY 5 cut(s) 25, 41, 53, 131, 162
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 2 cut(s) 136, 157
DpnI GATC 2 cut(s) 205, 364
DpnII GATC 2 cut(s) 203, 362
Eco47I GGWCC 1 cut(s) 255
Eco81I CCTNAGG 1 cut(s) 157
EcoO109I RGGNCCY 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 257, 356
FaeI CATG 2 cut(s) 204, 332
FaiI YATR 6 cut(s) 22, 75, 202, 291, 330, 378
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 2 cut(s) 200, 328
FblI GTMKAC 2 cut(s) 188, 377
Fnu4HI GCNGC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 340
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 26
GsaI CCCAGC 1 cut(s) 169
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 204, 332
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 3 cut(s) 189, 354, 378
Hpy188I TCNGA 3 cut(s) 184, 197, 247
Hpy188III TCNNGA 3 cut(s) 122, 156, 253
Hpy8I GTNNAC 3 cut(s) 189, 354, 378
Hpy99I CGWCG 2 cut(s) 61, 352
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 3 cut(s) 61, 119, 173
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 28, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 2 cut(s) 136, 157
HpySE526I ACGT 1 cut(s) 350
Hsp92II CATG 2 cut(s) 204, 332
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 2 cut(s) 203, 362
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 1 cut(s) 12
LweI GCATC 3 cut(s) 42, 276, 308
MabI ACCWGGT 1 cut(s) 356
MaeI CTAG 1 cut(s) 340
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 234
MalI GATC 2 cut(s) 205, 364
MboI GATC 2 cut(s) 203, 362
MboII GAAGA 2 cut(s) 122, 125
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 2 cut(s) 152, 163
MseI TTAA 5 cut(s) 64, 100, 214, 273, 298
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 2 cut(s) 259, 358
MvaI CCWGG 2 cut(s) 259, 358
MwoI GCNNNNNNNGC 1 cut(s) 286
NdeII GATC 2 cut(s) 203, 362
NlaIII CATG 2 cut(s) 204, 332
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 234
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 257, 356
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 2 cut(s) 257, 356
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 255
PspPPI RGGWCCY 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 258
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 5 cut(s) 64, 100, 214, 273, 298
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 2 cut(s) 203, 362
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 259, 358
SetI ASST 8 cut(s) 27, 43, 260, 296, 338, 353, 362, 383
SexAI ACCWGGT 1 cut(s) 356
SfaNI GCATC 3 cut(s) 42, 276, 308
SinI GGWCC 1 cut(s) 255
SspI AATATT 1 cut(s) 242
SspMI CTAG 1 cut(s) 340
StyD4I CCNGG 2 cut(s) 257, 356
TaaI ACNGT 3 cut(s) 61, 119, 173
TaiI ACGT 1 cut(s) 353
Tru1I TTAA 5 cut(s) 64, 100, 214, 273, 298
Tru9I TTAA 5 cut(s) 64, 100, 214, 273, 298
TscAI CASTG 2 cut(s) 176, 287
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 345
TspRI CASTG 2 cut(s) 176, 287
VpaK11BI GGWCC 1 cut(s) 255
XmiI GTMKAC 2 cut(s) 188, 377
XspI CTAG 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.