Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026340.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1213 .. 6750

Gene Structure 5538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026340.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ctggttgagagcgccgggggtggagttggggacggcgatgccgacgcctttggagtgggagagggggcggtggtgaattggcgcgaaaatgaggagagatctgtggttcttcaatctcaaacgggtgtcatggatacccctctgcctcttagtaaattggctatgcatttggttaatcacgatgacaaggacaagaaatatgtagttctagtagcacccggaagtttcaatcctcctacttacatgcatttacgaatgttggaactggcgagagacgcattgaattctgaaggcttttgtgtgattggaggttatatttcacctgttaatgatgcatacaacaagaggggacttatatctgctgaacatcgtatacagttgtgtcatctagcctgcaaaagttcagagtttgtaatggttgatccctgggagtactgtctatatcttgctattctgctgtgtacttatgttagttttaaaccatttttacaggcaagacaaagtaccttccaacgaagtttaacagtactgtctagagtcaagggtttcttgtctgagtctgggctgatacccagtgtcaattcactaattgtttcctttgaaacagagctccggttcttactatcttttgcttcaggacttcctatttctgtacttcaaaaagctgctgctaagtccagggaattcaaagctgcatatggtaaacacttgaagcattctgaagatagctttccctttcaaagtccagttgacaagatggttgagagcatccaaaagtctaccacatcgtggcaaagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

266

Amino Acids

29.34

Weight (kDa)

6.42

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	789
AccI	GTMKAC	2 cut(s)	373, 779
AccII	CGCG	1 cut(s)	84
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	2 cut(s)	283, 683
AcuI	CTGAAG	3 cut(s)	309, 618, 741
AcyI	GRCGYC	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	789
AfaI	GTAC	5 cut(s)	434, 463, 505, 528, 654
AfiI	CCNNNNNNNGG	1 cut(s)	789
AgsI	TTSAA	8 cut(s)	113, 229, 283, 602, 659, 688, 712, 740
AjnI	CCWGG	2 cut(s)	425, 677
AluBI	AGCT	4 cut(s)	610, 665, 692, 729
AluI	AGCT	4 cut(s)	610, 665, 692, 729
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	416
ApeKI	GCWGC	3 cut(s)	665, 668, 692
ApoI	RAATTY	2 cut(s)	283, 683
AspLEI	GCGC	2 cut(s)	14, 84
AsuC2I	CCSGG	2 cut(s)	16, 219
AsuHPI	GGTGA	2 cut(s)	85, 312
BanII	GRGCYC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	3 cut(s)	652, 655, 679
BccI	CCATC	1 cut(s)	751
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	427, 679
BciVI	GTATCC	1 cut(s)	127
BcnI	CCSGG	2 cut(s)	16, 219
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	3 cut(s)	209, 389, 534
BfoI	RGCGCY	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	3 cut(s)	666, 669, 693
BlsI	GCNGC	3 cut(s)	667, 670, 694
BmcAI	AGTACT	2 cut(s)	434, 528
Bme1390I	CCNGG	4 cut(s)	16, 219, 427, 679
BmrFI	CCNGG	4 cut(s)	16, 219, 427, 679
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	3 cut(s)	28, 322, 777
BmuI	ACTGGG	1 cut(s)	567
BpuMI	CCSGG	2 cut(s)	16, 219
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	15, 425, 426, 678
BsaWI	WCCGGW	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	1 cut(s)	789
Bse1I	ACTGG	3 cut(s)	270, 573, 746
BseBI	CCWGG	2 cut(s)	427, 679
BseDI	CCNNGG	4 cut(s)	15, 425, 426, 678
BseGI	GGATG	1 cut(s)	768
BseLI	CCNNNNNNNGG	1 cut(s)	789
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	3 cut(s)	270, 573, 746
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	652, 655, 679
Bsh1236I	CGCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	3 cut(s)	15, 219, 613
BslFI	GGGAC	2 cut(s)	44, 363
BslI	CCNNNNNNNGG	1 cut(s)	789
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	2 cut(s)	44, 363
BsmI	GAATGC	1 cut(s)	715
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	2 cut(s)	98, 421
BspACI	CCGC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	547
BspFNI	CGCG	1 cut(s)	84
BspPI	GGATC	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	270, 573, 746
BssECI	CCNNGG	4 cut(s)	15, 425, 426, 678
BssMI	GATC	2 cut(s)	98, 421
BssNAI	GTATAC	1 cut(s)	374
BssNI	GRCGYC	1 cut(s)	45
Bst1107I	GTATAC	1 cut(s)	374
Bst2UI	CCWGG	2 cut(s)	427, 679
Bst4CI	ACNGT	4 cut(s)	378, 437, 526, 531
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	3 cut(s)	149, 555, 672
BstF5I	GGATG	1 cut(s)	768
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 84
BstKTI	GATC	2 cut(s)	101, 424
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	98, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	2 cut(s)	427, 679
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	4 cut(s)	14, 217, 425, 677
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	652, 655, 679
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BstZ17I	GTATAC	1 cut(s)	374
BsuI	GTATCC	1 cut(s)	127
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	768
BtsIMutI	CAGTG	1 cut(s)	580
Cac8I	GCNNGC	1 cut(s)	394
CfoI	GCGC	2 cut(s)	14, 84
CseI	GACGC	2 cut(s)	53, 284
Csp6I	GTAC	5 cut(s)	433, 462, 504, 527, 653
CviAII	CATG	2 cut(s)	130, 244
CviJI	RGCY	8 cut(s)	161, 294, 392, 565, 610, 665, 692, 729
CviKI_1	RGCY	8 cut(s)	161, 294, 392, 565, 610, 665, 692, 729
CviQI	GTAC	5 cut(s)	433, 462, 504, 527, 653
DdeI	CTNAG	3 cut(s)	149, 555, 672
DpnI	GATC	2 cut(s)	100, 423
DpnII	GATC	2 cut(s)	98, 421
DraI	TTTAAA	1 cut(s)	478
DraIII	CACNNNGTG	1 cut(s)	789
Ecl136II	GAGCTC	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	612
Eco53kI	GAGCTC	1 cut(s)	610
Eco57I	CTGAAG	3 cut(s)	309, 618, 741
EcoICRI	GAGCTC	1 cut(s)	610
EcoRI	GAATTC	2 cut(s)	283, 683
EcoRII	CCWGG	2 cut(s)	425, 677
EcoT22I	ATGCAT	3 cut(s)	168, 249, 337
EcoT38I	GRGCYC	1 cut(s)	612
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	2 cut(s)	133, 247
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	2 cut(s)	44, 363
FatI	CATG	2 cut(s)	129, 243
FauNDI	CATATG	1 cut(s)	697
FblI	GTMKAC	2 cut(s)	373, 779
Fnu4HI	GCNGC	3 cut(s)	666, 669, 693
FokI	GGATG	1 cut(s)	755
FriOI	GRGCYC	1 cut(s)	612
Fsp4HI	GCNGC	3 cut(s)	666, 669, 693
FspBI	CTAG	3 cut(s)	209, 389, 534
GlaI	GCGC	2 cut(s)	13, 83
GluI	GCNGC	3 cut(s)	666, 669, 693
HaeII	RGCGCY	1 cut(s)	15
HapII	CCGG	3 cut(s)	15, 219, 613
HgaI	GACGC	2 cut(s)	53, 284
HhaI	GCGC	2 cut(s)	14, 84
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	133, 247
Hin6I	GCGC	2 cut(s)	12, 82
HinP1I	GCGC	2 cut(s)	12, 82
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	2 cut(s)	537, 557
HpaII	CCGG	3 cut(s)	15, 219, 613
HphI	GGTGA	2 cut(s)	85, 312
Hpy166II	GTNNAC	5 cut(s)	374, 462, 704, 751, 780
Hpy188I	TCNGA	4 cut(s)	289, 406, 556, 721
Hpy188III	TCNNGA	3 cut(s)	179, 534, 636
Hpy8I	GTNNAC	5 cut(s)	374, 462, 704, 751, 780
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	284, 517
HpyCH4III	ACNGT	4 cut(s)	378, 437, 526, 531
HpyCH4V	TGCA	5 cut(s)	166, 247, 335, 396, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	3 cut(s)	149, 555, 672
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	133, 247
HspAI	GCGC	2 cut(s)	12, 82
Kzo9I	GATC	2 cut(s)	98, 421
LmnI	GCTCC	1 cut(s)	615
Lsp1109I	GCAGC	3 cut(s)	652, 655, 679
LweI	GCATC	3 cut(s)	28, 322, 777
MaeI	CTAG	3 cut(s)	209, 389, 534
MalI	GATC	2 cut(s)	100, 423
MboI	GATC	2 cut(s)	98, 421
MboII	GAAGA	2 cut(s)	101, 734
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	6 cut(s)	76, 155, 283, 580, 588, 683
MlyI	GAGTC	2 cut(s)	546, 566
MmeI	TCCRAC	2 cut(s)	240, 535
MnlI	CCTC	7 cut(s)	55, 85, 150, 156, 243, 302, 339
Mph1103I	ATGCAT	3 cut(s)	168, 249, 337
MseI	TTAA	4 cut(s)	174, 327, 477, 521
MspI	CCGG	3 cut(s)	15, 219, 613
MspR9I	CCNGG	4 cut(s)	16, 219, 427, 679
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	2 cut(s)	427, 679
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	2 cut(s)	16, 219
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	2 cut(s)	98, 421
NlaIII	CATG	2 cut(s)	133, 247
NsiI	ATGCAT	3 cut(s)	168, 249, 337
NspI	RCATGY	1 cut(s)	247
PasI	CCCWGGG	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	1 cut(s)	715
PflMI	CCANNNNNTGG	1 cut(s)	789
PkrI	GCNGC	3 cut(s)	667, 670, 694
PleI	GAGTC	2 cut(s)	545, 565
PpsI	GAGTC	2 cut(s)	545, 565
Psp124BI	GAGCTC	1 cut(s)	612
Psp6I	CCWGG	2 cut(s)	425, 677
PspGI	CCWGG	2 cut(s)	425, 677
PsrI	GAACNNNNNNTAC	2 cut(s)	357, 389
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	5 cut(s)	434, 463, 505, 528, 654
RsaNI	GTAC	5 cut(s)	433, 462, 504, 527, 653
SacI	GAGCTC	1 cut(s)	612
SaqAI	TTAA	4 cut(s)	174, 327, 477, 521
SatI	GCNGC	3 cut(s)	666, 669, 693
Sau3AI	GATC	2 cut(s)	98, 421
ScaI	AGTACT	2 cut(s)	434, 528
SchI	GAGTC	2 cut(s)	546, 566
ScrFI	CCNGG	4 cut(s)	16, 219, 427, 679
SduI	GDGCHC	1 cut(s)	612
SetI	ASST	7 cut(s)	313, 325, 509, 612, 667, 694, 731
SfaNI	GCATC	3 cut(s)	28, 322, 777
Sse9I	AATT	6 cut(s)	76, 155, 283, 580, 588, 683
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	3 cut(s)	209, 389, 534
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	4 cut(s)	14, 217, 425, 677
TaaI	ACNGT	4 cut(s)	378, 437, 526, 531
TasI	AATT	6 cut(s)	76, 155, 283, 580, 588, 683
TatI	WGTACW	4 cut(s)	432, 461, 526, 652
Tru1I	TTAA	4 cut(s)	174, 327, 477, 521
Tru9I	TTAA	4 cut(s)	174, 327, 477, 521
TscAI	CASTG	1 cut(s)	580
TseI	GCWGC	3 cut(s)	665, 668, 692
TspRI	CASTG	1 cut(s)	580
Van91I	CCANNNNNTGG	1 cut(s)	789
XapI	RAATTY	2 cut(s)	283, 683
XbaI	TCTAGA	1 cut(s)	533
XceI	RCATGY	1 cut(s)	247
XmiI	GTMKAC	2 cut(s)	373, 779
XspI	CTAG	3 cut(s)	209, 389, 534
ZrmI	AGTACT	2 cut(s)	434, 528
Zsp2I	ATGCAT	3 cut(s)	168, 249, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.