Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014200.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

685 .. 1382

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014200.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggcatccctgacttcgtcgcggaattccaactcctcctggacgctgaagcagaacaagctatttgagaatgccctggctgtgtacgacaaggacacacaggaccggtggcacaatttggccaaggctgtgggtggaaaatcagccgaggaagtcaagaggcactatgagattctggtgcaggatctcatgcatatagaatctgaggcgactcctttgcttatccggctgcgccctcccgtagacgacggctaccagcctcatcggcgagcgaagggtgtggccggatgggcgtgttttcgcttggtggctggaggtgatcaagattgggggctgcgacaggaggcgttttctttttctcagatgaagacaacggcggattggtgttctgttgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005788 GO:0005789 GO:0005886 GO:0006355 GO:0006417 GO:0006457 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0010608 GO:0012505 GO:0016020 GO:0016021 GO:0019219 GO:0019222 GO:0031090 GO:0031224 GO:0031323 GO:0031326 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0034248 GO:0042175 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0050708 GO:0050789 GO:0050794 GO:0051046 GO:0051049 GO:0051087 GO:0051171 GO:0051223 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0070201 GO:0071944 GO:0080090 GO:0090087 GO:0098827 GO:0140110 GO:1903506 GO:1903530 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

132

Amino Acids

14.91

Weight (kDa)

7.82

Isoelectric Point (pI)

71.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	22
AciI	CCGC	2 cut(s)	22, 377
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	2 cut(s)	120, 282
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	86
AgeI	ACCGGT	1 cut(s)	105
AjnI	CCWGG	2 cut(s)	38, 75
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	2 cut(s)	120, 282
ApeKI	GCWGC	2 cut(s)	229, 334
ApoI	RAATTY	1 cut(s)	25
AsiGI	ACCGGT	1 cut(s)	105
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	216, 321
BccI	CCATC	1 cut(s)	282
BceAI	ACGGC	2 cut(s)	265, 390
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	2 cut(s)	40, 77
BclI	TGATCA	1 cut(s)	319
BglI	GCCNNNNNGGC	2 cut(s)	265, 290
BisI	GCNGC	2 cut(s)	230, 335
BlsI	GCNGC	2 cut(s)	231, 336
Bme1390I	CCNGG	2 cut(s)	40, 77
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	40, 77
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	75, 123, 147
BsaWI	WCCGGW	1 cut(s)	105
Bse118I	RCCGGY	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	40, 77
BseDI	CCNNGG	3 cut(s)	75, 123, 147
BseGI	GGATG	2 cut(s)	5, 293
BseMII	CTCAG	2 cut(s)	195, 374
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	216, 321
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	122, 284
BshTI	ACCGGT	1 cut(s)	105
BsiSI	CCGG	3 cut(s)	106, 226, 285
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	122, 284
Bsp143I	GATC	2 cut(s)	184, 319
BspACI	CCGC	2 cut(s)	22, 377
BspANI	GGCC	2 cut(s)	122, 284
BspCNI	CTCAG	2 cut(s)	196, 373
BspFNI	CGCG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	75, 123, 147
BssMI	GATC	2 cut(s)	184, 319
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	2 cut(s)	40, 77
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	204, 360
BstF5I	GGATG	2 cut(s)	5, 293
BstFNI	CGCG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	2 cut(s)	187, 322
BstMBI	GATC	2 cut(s)	184, 319
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 226, 265, 290
BstNI	CCWGG	2 cut(s)	40, 77
BstSCI	CCNGG	2 cut(s)	38, 75
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	216, 321
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	122, 284
BtsCI	GGATG	2 cut(s)	5, 293
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	85
CspAI	ACCGGT	1 cut(s)	105
CviAII	CATG	1 cut(s)	190
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	204, 360
DpnI	GATC	2 cut(s)	186, 321
DpnII	GATC	2 cut(s)	184, 319
EaeI	YGGCCR	2 cut(s)	120, 282
EciI	GGCGGA	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	38, 75
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	193
FaiI	YATR	5 cut(s)	168, 191, 195, 197, 397
FatI	CATG	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	230, 335
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	2 cut(s)	230, 335
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	2 cut(s)	230, 335
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	122, 284
HapII	CCGG	3 cut(s)	106, 226, 285
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	3 cut(s)	172, 200, 211
HpaII	CCGG	3 cut(s)	106, 226, 285
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	85, 244
Hpy188I	TCNGA	2 cut(s)	205, 363
Hpy188III	TCNNGA	2 cut(s)	157, 323
Hpy8I	GTNNAC	2 cut(s)	85, 244
Hpy99I	CGWCG	2 cut(s)	22, 251
HpyAV	CCTTC	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	181, 193, 395
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 226, 265, 290
HpyF3I	CTNAG	2 cut(s)	204, 360
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	184, 319
Lsp1109I	GCAGC	2 cut(s)	216, 321
LweI	GCATC	1 cut(s)	14
MalI	GATC	2 cut(s)	186, 321
MboI	GATC	2 cut(s)	184, 319
MboII	GAAGA	1 cut(s)	379
MflI	RGATCY	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	2 cut(s)	25, 115
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	8 cut(s)	46, 142, 153, 199, 246, 270, 308, 337
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	3 cut(s)	106, 226, 285
MspR9I	CCNGG	2 cut(s)	40, 77
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	40, 77
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	4 cut(s)	58, 226, 265, 290
NdeII	GATC	2 cut(s)	184, 319
NlaIII	CATG	1 cut(s)	193
NmeAIII	GCCGAG	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	195
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	172, 200
PflFI	GACNNNGTC	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	38
PinAI	ACCGGT	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	231, 336
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	38, 75
PspGI	CCWGG	2 cut(s)	38, 75
PspPI	GGNCC	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	184
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SatI	GCNGC	2 cut(s)	230, 335
Sau3AI	GATC	2 cut(s)	184, 319
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	40, 77
SetI	ASST	2 cut(s)	63, 319
SfaNI	GCATC	1 cut(s)	14
SinI	GGWCC	1 cut(s)	103
Sse9I	AATT	2 cut(s)	25, 115
SsiI	CCGC	2 cut(s)	22, 377
StyD4I	CCNGG	2 cut(s)	38, 75
StyI	CCWWGG	1 cut(s)	123
TasI	AATT	2 cut(s)	25, 115
TfiI	GAWTC	2 cut(s)	172, 200
TseI	GCWGC	2 cut(s)	229, 334
TspDTI	ATGAA	1 cut(s)	380
Tth111I	GACNNNGTC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.