Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013358.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1369

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013358.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgggagtggatcctgttcgctccaacccacgtaacttcttttcctttttcagaacctatcaatgcagctctgtcgtatgttgggactttactgaccggaaccacccccatcaacaataccacgtaaaaagttttggatatgcgtggccgtattgtgctgctgctgatgtgattttatgtgagtttcaaaggtgtgcagattttgtgcggaagagttttggacttctgttgatgggtgctcctaagcagaagtggacaccagaagaagaagcagcccttaaagctggagttcttaaacatggggcaggcaaatggcgcacaatactctcggacaaagagtttggtgctatcttgcatctgcgttcaaatgttgacctcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

127

Amino Acids

14.59

Weight (kDa)

9.06

Isoelectric Point (pI)

26.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	2 cut(s)	5, 18
AcoI	YGGCCR	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	188, 366
AluBI	AGCT	2 cut(s)	69, 284
AluI	AGCT	2 cut(s)	69, 284
Alw21I	GWGCWC	1 cut(s)	241
AlwI	GGATC	2 cut(s)	5, 18
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	66, 158, 161, 272
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AspLEI	GCGC	1 cut(s)	318
BamHI	GGATCC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	4 cut(s)	78, 145, 148, 284
BccI	CCATC	2 cut(s)	117, 226
BceAI	ACGGC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BisI	GCNGC	4 cut(s)	67, 159, 162, 273
BlsI	GCNGC	4 cut(s)	68, 160, 163, 274
BmiI	GGNNCC	2 cut(s)	12, 101
BmsI	GCATC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	362
BsaAI	YACGTR	2 cut(s)	32, 124
BsaWI	WCCGGW	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	78, 145, 148, 284
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	12, 101
BspPI	GGATC	2 cut(s)	5, 18
BssMI	GATC	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	206
BstBAI	YACGTR	2 cut(s)	32, 124
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 315
BstV1I	GCAGC	4 cut(s)	78, 145, 148, 284
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	318
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	4 cut(s)	69, 148, 275, 284
CviKI_1	RGCY	4 cut(s)	69, 148, 275, 284
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
FaeI	CATG	1 cut(s)	302
FaiI	YATR	4 cut(s)	79, 141, 178, 300
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	67, 159, 162, 273
Fsp4HI	GCNGC	4 cut(s)	67, 159, 162, 273
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	4 cut(s)	67, 159, 162, 273
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	97
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HpaII	CCGG	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	255, 373
Hpy188I	TCNGA	2 cut(s)	53, 331
Hpy8I	GTNNAC	2 cut(s)	255, 373
HpyCH4IV	ACGT	2 cut(s)	31, 123
HpyCH4V	TGCA	3 cut(s)	66, 197, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 315
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	31, 123
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	2 cut(s)	26, 244
LpnPI	CCDG	5 cut(s)	27, 110, 270, 273, 291
Lsp1109I	GCAGC	4 cut(s)	78, 145, 148, 284
LweI	GCATC	1 cut(s)	364
MaeII	ACGT	2 cut(s)	31, 123
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	3 cut(s)	223, 275, 278
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	48
MseI	TTAA	2 cut(s)	279, 294
MspI	CCGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	281, 315
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	2 cut(s)	12, 101
PkrI	GCNGC	4 cut(s)	68, 160, 163, 274
Ppu21I	YACGTR	2 cut(s)	32, 124
PspN4I	GGNNCC	2 cut(s)	12, 101
PsuI	RGATCY	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	279, 294
SatI	GCNGC	4 cut(s)	67, 159, 162, 273
Sau3AI	GATC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	7 cut(s)	34, 59, 71, 126, 194, 286, 378
SfaNI	GCATC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SsiI	CCGC	1 cut(s)	208
TaiI	ACGT	2 cut(s)	34, 126
Tru1I	TTAA	2 cut(s)	279, 294
Tru9I	TTAA	2 cut(s)	279, 294
TseI	GCWGC	4 cut(s)	66, 158, 161, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.