Rmu_sc0010734.1_g000002
MYB Family

Protein ALWAYS EARLY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010734.1
N/A
Physical Location & Seq
Reverse (-)
4529 .. 6318
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010734.1_g000002.1.cds

Sequence Viewer

Length: 711 bp
atggccccgataaggaaaacaaagggtgtgaataagaggtttccttatagcaacgaggttgcttctaacaaatatggtgataatgctaacaagaacaagcagaaagtgagtactgaccttgttatgagtatgaccataagaaataatgaagactcttcctttgatgcgctacttactctggcagatctgtccttgaggatgcctgaagcaactgctgaaatggaatcctctgcacttgtcgaggaagaaaacttcaacattgctaagaagtctaaactcaaagggaatccttcagttactatggttgaagacactgctttgaaaacttctcaactgggaaaactcaaagagggagttcaacaatctgacactggaatacaaaaaagaaaacaaaagtcgccagttaaattagtgacagttcttactcttgaatcccggatccgggatcttcaggcccaattggccactttgagggctaggatcgctcatgaagaagagcccaacaggagcaatcactggccgccttcgaggtgctatctcaaaatctggcccagactcgcgaggcagcccaacaggccgagcacgccgccgttcaagctggcttccatctggatgatcatcttctccgcctgtcctacgcagctcgaaggctttaggcctctagcattaggcccatcatcttttgtattatggatactattaatccagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
DIRP Myb_DNA-binding

Protein Analysis

236

Amino Acids

26.56

Weight (kDa)

9.82

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 560
AciI CCGC 3 cut(s) 521, 587, 627
AclWI GGATC 4 cut(s) 433, 446, 453, 488
AcoI YGGCCR 2 cut(s) 462, 518
AcuI CTGAAG 3 cut(s) 225, 276, 434
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 4 cut(s) 12, 441, 442, 471
AgsI TTSAA 6 cut(s) 256, 308, 322, 359, 431, 595
AluBI AGCT 2 cut(s) 598, 643
AluI AGCT 2 cut(s) 598, 643
Alw21I GWGCWC 1 cut(s) 584
AlwI GGATC 4 cut(s) 433, 446, 453, 488
AoxI GGCC 8 cut(s) 3, 453, 462, 518, 548, 575, 656, 670
ApeKI GCWGC 2 cut(s) 565, 640
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AseI ATTAAT 1 cut(s) 701
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 4 cut(s) 4, 454, 549, 671
AsuC2I CCSGG 2 cut(s) 436, 443
AsuHPI GGTGA 1 cut(s) 89
BalI TGGCCA 1 cut(s) 464
BamHI GGATCC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 501
BbsI GAAGAC 2 cut(s) 156, 315
Bbv12I GWGCWC 1 cut(s) 584
BbvI GCAGC 2 cut(s) 577, 652
BccI CCATC 2 cut(s) 614, 682
BceAI ACGGC 1 cut(s) 574
BciVI GTATCC 1 cut(s) 687
BclI TGATCA 1 cut(s) 615
BcnI CCSGG 2 cut(s) 436, 443
BfaI CTAG 2 cut(s) 477, 662
BfuI GTATCC 1 cut(s) 687
BglI GCCNNNNNGGC 2 cut(s) 461, 574
BglII AGATCT 1 cut(s) 184
BisI GCNGC 4 cut(s) 521, 566, 587, 641
BlsI GCNGC 4 cut(s) 522, 567, 588, 642
BmcAI AGTACT 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 436, 443
BmgT120I GGNCC 4 cut(s) 4, 454, 549, 671
BmiI GGNNCC 2 cut(s) 6, 440
BmrFI CCNGG 2 cut(s) 436, 443
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 2 cut(s) 154, 189
BmuI ACTGGG 1 cut(s) 344
BpiI GAAGAC 2 cut(s) 156, 315
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 2 cut(s) 436, 443
BsaBI GATNNNNATC 1 cut(s) 617
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 441, 442, 471
Bse1I ACTGG 5 cut(s) 339, 376, 401, 521, 706
Bse3DI GCAATG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 617
BseGI GGATG 2 cut(s) 204, 618
BseJI GATNNNNATC 1 cut(s) 617
BseLI CCNNNNNNNGG 4 cut(s) 12, 441, 442, 471
BseMI GCAATG 1 cut(s) 258
BseNI ACTGG 5 cut(s) 339, 376, 401, 521, 706
BseXI GCAGC 2 cut(s) 577, 652
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 560
BshFI GGCC 8 cut(s) 5, 455, 464, 520, 550, 577, 658, 672
BsiHKAI GWGCWC 1 cut(s) 584
BsiSI CCGG 2 cut(s) 436, 442
BslI CCNNNNNNNGG 4 cut(s) 12, 441, 442, 471
BsnI GGCC 8 cut(s) 5, 455, 464, 520, 550, 577, 658, 672
Bsp1286I GDGCHC 2 cut(s) 501, 584
Bsp143I GATC 5 cut(s) 184, 438, 445, 480, 615
Bsp68I TCGCGA 1 cut(s) 560
BspACI CCGC 3 cut(s) 521, 587, 627
BspANI GGCC 8 cut(s) 5, 455, 464, 520, 550, 577, 658, 672
BspFNI CGCG 1 cut(s) 560
BspHI TCATGA 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 6, 440
BspPI GGATC 4 cut(s) 433, 446, 453, 488
BspQI GCTCTTC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 5 cut(s) 339, 376, 401, 521, 706
BssMI GATC 5 cut(s) 184, 438, 445, 480, 615
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 2 cut(s) 160, 489
BstC8I GCNNGC 2 cut(s) 584, 600
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 204, 618
BstFNI CGCG 1 cut(s) 560
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 5 cut(s) 187, 441, 448, 483, 618
BstMBI GATC 5 cut(s) 184, 438, 445, 480, 615
BstMWI GCNNNNNNNGC 5 cut(s) 461, 482, 574, 583, 595
BstSCI CCNGG 2 cut(s) 434, 441
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 2 cut(s) 577, 652
BstV2I GAAGAC 2 cut(s) 156, 315
BstX2I RGATCY 3 cut(s) 184, 438, 445
BstYI RGATCY 3 cut(s) 184, 438, 445
BsuI GTATCC 1 cut(s) 687
BsuRI GGCC 8 cut(s) 5, 455, 464, 520, 550, 577, 658, 672
BtsCI GGATG 2 cut(s) 204, 618
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 3 cut(s) 312, 369, 514
BtuMI TCGCGA 1 cut(s) 560
Cac8I GCNNGC 2 cut(s) 584, 600
CciI TCATGA 1 cut(s) 487
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 4 cut(s) 4, 454, 549, 671
Csp6I GTAC 1 cut(s) 111
CviAII CATG 1 cut(s) 488
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 264
DpnI GATC 5 cut(s) 186, 440, 447, 482, 617
DpnII GATC 5 cut(s) 184, 438, 445, 480, 615
EaeI YGGCCR 2 cut(s) 462, 518
Eam1104I CTCTTC 2 cut(s) 160, 489
EarI CTCTTC 2 cut(s) 160, 489
EciI GGCGGA 1 cut(s) 616
Eco147I AGGCCT 1 cut(s) 658
Eco24I GRGCYC 1 cut(s) 501
Eco57I CTGAAG 3 cut(s) 225, 276, 434
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 1 cut(s) 491
FaiI YATR 8 cut(s) 48, 75, 125, 131, 137, 302, 489, 691
FatI CATG 1 cut(s) 487
FbaI TGATCA 1 cut(s) 615
Fnu4HI GCNGC 4 cut(s) 521, 566, 587, 641
FokI GGATG 2 cut(s) 211, 625
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 4 cut(s) 521, 566, 587, 641
FspBI CTAG 2 cut(s) 477, 662
GlaI GCGC 1 cut(s) 168
GluI GCNGC 4 cut(s) 521, 566, 587, 641
HaeIII GGCC 8 cut(s) 5, 455, 464, 520, 550, 577, 658, 672
HapII CCGG 2 cut(s) 436, 442
HhaI GCGC 1 cut(s) 169
Hin1II CATG 1 cut(s) 491
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 5 cut(s) 152, 224, 286, 431, 555
HpaII CCGG 2 cut(s) 436, 442
HphI GGTGA 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 4 cut(s) 428, 488, 559, 610
HpyAV CCTTC 3 cut(s) 300, 534, 641
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 5 cut(s) 461, 482, 574, 583, 595
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 1 cut(s) 491
HspAI GCGC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 5 cut(s) 184, 438, 445, 480, 615
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 1 cut(s) 507
Lsp1109I GCAGC 2 cut(s) 577, 652
LweI GCATC 2 cut(s) 154, 189
MaeI CTAG 2 cut(s) 477, 662
MaeIII GTNAC 2 cut(s) 295, 412
MalI GATC 5 cut(s) 186, 440, 447, 482, 617
MboI GATC 5 cut(s) 184, 438, 445, 480, 615
MboII GAAGA 8 cut(s) 147, 161, 257, 320, 440, 503, 506, 613
MfeI CAATTG 1 cut(s) 458
MflI RGATCY 3 cut(s) 184, 438, 445
MhlI GDGCHC 2 cut(s) 501, 584
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 2 cut(s) 407, 458
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 2 cut(s) 146, 549
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 2 cut(s) 405, 701
MslI CAYNNNNRTG 1 cut(s) 611
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 2 cut(s) 436, 442
MspR9I CCNGG 2 cut(s) 436, 443
MunI CAATTG 1 cut(s) 458
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 5 cut(s) 461, 482, 574, 583, 595
NciI CCSGG 2 cut(s) 436, 443
NdeII GATC 5 cut(s) 184, 438, 445, 480, 615
NlaIII CATG 1 cut(s) 491
NlaIV GGNNCC 2 cut(s) 6, 440
NmeAIII GCCGAG 1 cut(s) 603
NmuCI GTSAC 1 cut(s) 412
NruI TCGCGA 1 cut(s) 560
PagI TCATGA 1 cut(s) 487
PceI AGGCCT 1 cut(s) 658
PciSI GCTCTTC 1 cut(s) 489
PfeI GAWTC 3 cut(s) 224, 286, 431
PfoI TCCNGGA 2 cut(s) 434, 441
PkrI GCNGC 4 cut(s) 522, 567, 588, 642
PleI GAGTC 2 cut(s) 146, 549
PpsI GAGTC 2 cut(s) 146, 549
PshBI ATTAAT 1 cut(s) 701
PspN4I GGNNCC 2 cut(s) 6, 440
PspPI GGNCC 4 cut(s) 4, 454, 549, 671
PsuI RGATCY 3 cut(s) 184, 438, 445
RruI TCGCGA 1 cut(s) 560
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
RseI CAYNNNNRTG 1 cut(s) 611
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 2 cut(s) 405, 701
SatI GCNGC 4 cut(s) 521, 566, 587, 641
Sau3AI GATC 5 cut(s) 184, 438, 445, 480, 615
Sau96I GGNCC 4 cut(s) 4, 454, 549, 671
ScaI AGTACT 1 cut(s) 112
SchI GAGTC 2 cut(s) 146, 549
ScrFI CCNGG 2 cut(s) 436, 443
SduI GDGCHC 2 cut(s) 501, 584
SetI ASST 6 cut(s) 41, 60, 120, 533, 600, 645
SfaNI GCATC 2 cut(s) 154, 189
SfiI GGCCNNNNNGGCC 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 2 cut(s) 407, 458
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 3 cut(s) 521, 587, 627
SspMI CTAG 2 cut(s) 477, 662
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 2 cut(s) 434, 441
TaaI ACNGT 1 cut(s) 418
TaqI TCGA 3 cut(s) 240, 527, 645
TasI AATT 2 cut(s) 407, 458
TatI WGTACW 1 cut(s) 110
TauI GCSGC 2 cut(s) 523, 589
TfiI GAWTC 3 cut(s) 224, 286, 431
Tru1I TTAA 2 cut(s) 405, 701
Tru9I TTAA 2 cut(s) 405, 701
TscAI CASTG 3 cut(s) 319, 376, 521
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 565, 640
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 2 cut(s) 162, 504
TspRI CASTG 3 cut(s) 319, 376, 521
VspI ATTAAT 1 cut(s) 701
XspI CTAG 2 cut(s) 477, 662
ZrmI AGTACT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.