Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007869.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

92210 .. 92455

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007869.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atgggtcctctggtaaggactggaaattaccaatcattagaacatggcaagagtggtggggttagttgggctgctactgaagacattgcattgcttaatgcgttgaaggcgtttccgaaggatgtgtcgatgaggtgggagaagattgcagctgctgtgccggggaagacaaaggcggcttgtatgaagagagtggctgagttgaagaagggttttcggagcgccaaggctgctacagaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0016020 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0040007 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060560 GO:0061649 GO:0065007 GO:0071695 GO:0071944 GO:0080090 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140030 GO:0140035 GO:0140036 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

81

Amino Acids

8.68

Weight (kDa)

9.78

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	106, 205
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
AlwNI	CAGNNNCTG	1 cut(s)	155
ApeKI	GCWGC	4 cut(s)	71, 149, 152, 230
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	87, 173
BbvI	GCAGC	4 cut(s)	58, 139, 161, 217
BcnI	CCSGG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	5 cut(s)	72, 150, 153, 177, 231
BlsI	GCNGC	5 cut(s)	73, 151, 154, 178, 232
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	162
BpiI	GAAGAC	2 cut(s)	87, 173
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	161, 225
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	2 cut(s)	84, 89
BseDI	CCNNGG	2 cut(s)	161, 225
BseGI	GGATG	1 cut(s)	127
BseMI	GCAATG	2 cut(s)	84, 89
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	58, 139, 161, 217
BsiSI	CCGG	1 cut(s)	161
BspACI	CCGC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	6
BsrDI	GCAATG	2 cut(s)	84, 89
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	161, 225
BssT1I	CCWWGG	1 cut(s)	225
Bst6I	CTCTTC	2 cut(s)	182, 234
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 230
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	4 cut(s)	58, 139, 161, 217
BstV2I	GAAGAC	2 cut(s)	87, 173
BtsCI	GGATG	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	5
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	5 cut(s)	71, 152, 179, 197, 230
CviKI_1	RGCY	5 cut(s)	71, 152, 179, 197, 230
DdeI	CTNAG	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	182, 234
EarI	CTCTTC	2 cut(s)	182, 234
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	99
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	47
FaiI	YATR	2 cut(s)	45, 185
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	5 cut(s)	72, 150, 153, 177, 231
FokI	GGATG	1 cut(s)	134
Fsp4HI	GCNGC	5 cut(s)	72, 150, 153, 177, 231
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	5 cut(s)	72, 150, 153, 177, 231
HaeII	RGCGCY	1 cut(s)	225
HapII	CCGG	1 cut(s)	161
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	117, 219
HpyAV	CCTTC	3 cut(s)	100, 112, 202
HpyCH4V	TGCA	2 cut(s)	89, 149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 230
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	47
HspAI	GCGC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	2 cut(s)	6, 174
Lsp1109I	GCAGC	4 cut(s)	58, 139, 161, 217
MboII	GAAGA	5 cut(s)	92, 154, 178, 199, 217
MluCI	AATT	1 cut(s)	25
MnlI	CCTC	2 cut(s)	18, 126
MseI	TTAA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	107, 230
NciI	CCSGG	1 cut(s)	162
NlaIII	CATG	1 cut(s)	47
NlaIV	GGNNCC	1 cut(s)	6
PkrI	GCNGC	5 cut(s)	73, 151, 154, 178, 232
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	5 cut(s)	72, 150, 153, 177, 231
Sau96I	GGNCC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	2 cut(s)	137, 154
SfcI	CTRYAG	1 cut(s)	234
SgeI	CNNG	8 cut(s)	23, 33, 56, 61, 173, 174, 192, 238
SinI	GGWCC	1 cut(s)	5
Sse9I	AATT	1 cut(s)	25
SsiI	CCGC	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	225
TaqI	TCGA	1 cut(s)	128
TasI	AATT	1 cut(s)	25
TauI	GCSGC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	4 cut(s)	71, 149, 152, 230
TspDTI	ATGAA	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.