Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007150.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 213

Gene Structure 212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007150.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 212 bp

atgtacctctccgaaaagccccacccaattgatttctacaagtccgtcgacgcctcctcctcccccgaccgcgacatgatcatggaggtcgtctccgccgccgccgccgccaacgccgccgctccaggtggcaacaccagcagcggcggcgaggaccacgaggtccgcgccccgaagaagcgggcggagcattggatccaggaagagacgcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

71

Amino Acids

7.7

Weight (kDa)

5.19

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	3 cut(s)	72, 168, 211
AclWI	GGATC	2 cut(s)	190, 203
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	5
AjnI	CCWGG	2 cut(s)	124, 198
Alw26I	GTCTC	2 cut(s)	97, 200
AlwI	GGATC	2 cut(s)	190, 203
ApeKI	GCWGC	1 cut(s)	141
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	154, 163
AvaII	GGWCC	2 cut(s)	154, 163
BamHI	GGATCC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	153
BciT130I	CCWGG	2 cut(s)	126, 200
BclI	TGATCA	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	97, 200
BisI	GCNGC	9 cut(s)	99, 102, 105, 108, 117, 120, 142, 145, 148
BlsI	GCNGC	9 cut(s)	100, 103, 106, 109, 118, 121, 143, 146, 149
Bme1390I	CCNGG	2 cut(s)	126, 200
Bme18I	GGWCC	2 cut(s)	154, 163
BmgT120I	GGNCC	2 cut(s)	154, 163
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	2 cut(s)	126, 200
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
BpmI	CTGGAG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
BseBI	CCWGG	2 cut(s)	126, 200
BseRI	GAGGAG	2 cut(s)	46, 49
BseXI	GCAGC	1 cut(s)	153
Bsh1236I	CGCG	3 cut(s)	72, 168, 211
Bsh1285I	CGRYCG	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	70
BsmAI	GTCTC	2 cut(s)	97, 200
BsmBI	CGTCTC	2 cut(s)	97, 200
Bsp143I	GATC	2 cut(s)	78, 195
BspFNI	CGCG	3 cut(s)	72, 168, 211
BspLI	GGNNCC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	190, 203
BsrBI	CCGCTC	1 cut(s)	122
BssMI	GATC	2 cut(s)	78, 195
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	126, 200
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	183
BstFNI	CGCG	3 cut(s)	72, 168, 211
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	81, 198
BstMAI	GTCTC	2 cut(s)	97, 200
BstMBI	GATC	2 cut(s)	78, 195
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	7 cut(s)	104, 107, 113, 116, 138, 147, 187
BstNI	CCWGG	2 cut(s)	126, 200
BstSCI	CCNGG	2 cut(s)	124, 198
BstUI	CGCG	3 cut(s)	72, 168, 211
BstV1I	GCAGC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	154, 163
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	76, 82
CviJI	RGCY	1 cut(s)	19
CviKI_1	RGCY	1 cut(s)	19
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	2 cut(s)	80, 197
DpnII	GATC	2 cut(s)	78, 195
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EciI	GGCGGA	2 cut(s)	85, 200
Eco47I	GGWCC	2 cut(s)	154, 163
EcoRII	CCWGG	2 cut(s)	124, 198
Esp3I	CGTCTC	2 cut(s)	97, 200
FaeI	CATG	2 cut(s)	79, 85
FaiI	YATR	2 cut(s)	77, 83
FatI	CATG	2 cut(s)	75, 81
FauI	CCCGC	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	9 cut(s)	99, 102, 105, 108, 117, 120, 142, 145, 148
Fsp4HI	GCNGC	9 cut(s)	99, 102, 105, 108, 117, 120, 142, 145, 148
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	9 cut(s)	99, 102, 105, 108, 117, 120, 142, 145, 148
GsuI	CTGGAG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	79, 85
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	13
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	2 cut(s)	50, 53
HpyF10VI	GCNNNNNNNGC	7 cut(s)	104, 107, 113, 116, 138, 147, 187
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	79, 85
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	78, 195
LmnI	GCTCC	2 cut(s)	127, 187
LpnPI	CCDG	4 cut(s)	111, 138, 151, 185
Lsp1109I	GCAGC	1 cut(s)	153
MalI	GATC	2 cut(s)	80, 197
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	2 cut(s)	78, 195
MboII	GAAGA	1 cut(s)	187
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	1 cut(s)	27
MnlI	CCTC	7 cut(s)	17, 64, 67, 70, 79, 145, 154
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	126, 200
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	126, 200
MvnI	CGCG	3 cut(s)	72, 168, 211
MwoI	GCNNNNNNNGC	7 cut(s)	104, 107, 113, 116, 138, 147, 187
NdeII	GATC	2 cut(s)	78, 195
NlaIII	CATG	2 cut(s)	79, 85
NlaIV	GGNNCC	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	9 cut(s)	100, 103, 106, 109, 118, 121, 143, 146, 149
Psp6I	CCWGG	2 cut(s)	124, 198
PspGI	CCWGG	2 cut(s)	124, 198
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	2 cut(s)	154, 163
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	80
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	9 cut(s)	99, 102, 105, 108, 117, 120, 142, 145, 148
Sau3AI	GATC	2 cut(s)	78, 195
Sau96I	GGNCC	2 cut(s)	154, 163
ScrFI	CCNGG	2 cut(s)	126, 200
SetI	ASST	4 cut(s)	9, 90, 130, 165
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	154, 163
SmiMI	CAYNNNNRTG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	124, 198
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	27
TauI	GCSGC	8 cut(s)	101, 104, 107, 110, 119, 122, 147, 150
TseI	GCWGC	1 cut(s)	141
TspGWI	ACGGA	1 cut(s)	34
VpaK11BI	GGWCC	2 cut(s)	154, 163
XmiI	GTMKAC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.