Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004132.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

97319 .. 100883

Gene Structure 3565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004132.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgggaaaatctccttgttgtgatgaacctggactcaagaaagggccctggactcccgaagaggatgaaaagcttgtgcagtacatccaacaacacggtcatggaagctggcgagctcttcccaagcttgcagcaattgcaacacatctagacggacgaactgacaatgagatcaagaatttctggaatactcatttgaagaaaaaactgatccagatggggattgatccgatgacccatcaacccacaactgacctcttctccaacctccaggaccttttgccgctgcaatttcagacgttggatcaacttgctgctacaacattacatgatgctgcagaagctgtagctcaattggtcaagcttcaatacctgcaccagcaatatgtactcggctccaatcacatttcggctgcgcaacctccttctctaaccaatgaagcagaatatgtgaagaggaggaatcagtctataacatggaaccattacatgaggatgacaaatttggataattcaaagatggcgaaatttaaagcaaagtggaagtactgtccccaggcctatgcctgcaactccaaagaaaatggggacgacattgatgagaactcatatgatgtaccagtgaaagaagtgcccaatatatatcccagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009751 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0048519 GO:0048580 GO:0048581 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901332 GO:1901363 GO:1901700 GO:1903506 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

217

Amino Acids

24.75

Weight (kDa)

6.49

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	417
Acc36I	ACCTGC	1 cut(s)	381
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	3 cut(s)	205, 221, 312
AcsI	RAATTY	3 cut(s)	178, 502, 527
AfaI	GTAC	4 cut(s)	83, 390, 548, 618
AgsI	TTSAA	3 cut(s)	199, 368, 516
AjnI	CCWGG	4 cut(s)	28, 47, 270, 555
AluBI	AGCT	8 cut(s)	73, 108, 116, 127, 344, 350, 364, 651
AluI	AGCT	8 cut(s)	73, 108, 116, 127, 344, 350, 364, 651
Alw21I	GWGCWC	1 cut(s)	118
AlwI	GGATC	3 cut(s)	205, 221, 312
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	44, 558
ApaI	GGGCCC	1 cut(s)	48
ApeKI	GCWGC	5 cut(s)	131, 286, 314, 335, 413
ApoI	RAATTY	3 cut(s)	178, 502, 527
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	3 cut(s)	44, 45, 274
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	2 cut(s)	48, 636
BanII	GRGCYC	2 cut(s)	48, 118
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	5 cut(s)	143, 273, 301, 322, 400
BccI	CCATC	3 cut(s)	211, 246, 514
BciT130I	CCWGG	4 cut(s)	30, 49, 272, 557
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	2 cut(s)	336, 345
BfuAI	ACCTGC	1 cut(s)	381
BisI	GCNGC	6 cut(s)	132, 284, 287, 315, 336, 414
BlsI	GCNGC	6 cut(s)	133, 285, 288, 316, 337, 415
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	4 cut(s)	30, 49, 272, 557
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	44, 45, 274
BmiI	GGNNCC	3 cut(s)	46, 397, 482
BmrFI	CCNGG	4 cut(s)	30, 49, 272, 557
BmsI	GCATC	1 cut(s)	322
BpmI	CTGGAG	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	47, 555
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bse1I	ACTGG	1 cut(s)	620
BseBI	CCWGG	4 cut(s)	30, 49, 272, 557
BseDI	CCNNGG	2 cut(s)	47, 555
BseGI	GGATG	3 cut(s)	70, 84, 501
BseNI	ACTGG	1 cut(s)	620
BseRI	GAGGAG	1 cut(s)	472
BseSI	GKGCMC	2 cut(s)	48, 636
BseXI	GCAGC	5 cut(s)	143, 273, 301, 322, 400
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	2 cut(s)	98, 359
BshFI	GGCC	2 cut(s)	46, 560
BsiHKAI	GWGCWC	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	537, 602
BsmFI	GGGAC	2 cut(s)	537, 602
BsnI	GGCC	2 cut(s)	46, 560
Bsp120I	GGGCCC	1 cut(s)	44
Bsp1286I	GDGCHC	3 cut(s)	48, 118, 636
Bsp143I	GATC	4 cut(s)	171, 210, 226, 304
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	2 cut(s)	46, 560
BspLI	GGNNCC	3 cut(s)	46, 397, 482
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	381
BspPI	GGATC	3 cut(s)	205, 221, 312
BspQI	GCTCTTC	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	620
BssECI	CCNNGG	2 cut(s)	47, 555
BssMI	GATC	4 cut(s)	171, 210, 226, 304
Bst2UI	CCWGG	4 cut(s)	30, 49, 272, 557
Bst4CI	ACNGT	2 cut(s)	98, 551
Bst6I	CTCTTC	4 cut(s)	54, 123, 263, 449
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	4 cut(s)	110, 114, 129, 568
BstF5I	GGATG	3 cut(s)	70, 84, 501
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	4 cut(s)	174, 213, 229, 307
BstMBI	GATC	4 cut(s)	171, 210, 226, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 341
BstNI	CCWGG	4 cut(s)	30, 49, 272, 557
BstSCI	CCNGG	4 cut(s)	28, 47, 270, 555
BstSFI	CTRYAG	2 cut(s)	336, 345
BstSLI	GKGCMC	2 cut(s)	48, 636
BstV1I	GCAGC	5 cut(s)	143, 273, 301, 322, 400
BsuRI	GGCC	2 cut(s)	46, 560
BtsCI	GGATG	3 cut(s)	70, 84, 501
BtsIMutI	CAGTG	1 cut(s)	627
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	4 cut(s)	110, 114, 129, 568
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	44, 45, 274
Csp6I	GTAC	4 cut(s)	82, 389, 547, 617
CviAII	CATG	4 cut(s)	101, 329, 477, 490
CviQI	GTAC	4 cut(s)	82, 389, 547, 617
DpnI	GATC	4 cut(s)	173, 212, 228, 306
DpnII	GATC	4 cut(s)	171, 210, 226, 304
DraI	TTTAAA	1 cut(s)	532
Eam1104I	CTCTTC	4 cut(s)	54, 123, 263, 449
EarI	CTCTTC	4 cut(s)	54, 123, 263, 449
Ecl136II	GAGCTC	1 cut(s)	116
Eco147I	AGGCCT	1 cut(s)	560
Eco24I	GRGCYC	2 cut(s)	48, 118
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	116
EcoO109I	RGGNCCY	3 cut(s)	44, 45, 274
EcoRII	CCWGG	4 cut(s)	28, 47, 270, 555
EcoT38I	GRGCYC	2 cut(s)	48, 118
FaeI	CATG	4 cut(s)	104, 332, 480, 493
FaqI	GGGAC	2 cut(s)	537, 602
FatI	CATG	4 cut(s)	100, 328, 476, 489
FauNDI	CATATG	1 cut(s)	610
Fnu4HI	GCNGC	6 cut(s)	132, 284, 287, 315, 336, 414
FokI	GGATG	3 cut(s)	71, 77, 508
FriOI	GRGCYC	2 cut(s)	48, 118
Fsp4HI	GCNGC	6 cut(s)	132, 284, 287, 315, 336, 414
FspBI	CTAG	1 cut(s)	149
FspI	TGCGCA	1 cut(s)	417
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	6 cut(s)	132, 284, 287, 315, 336, 414
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	46, 560
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	4 cut(s)	104, 332, 480, 493
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HindIII	AAGCTT	3 cut(s)	71, 125, 362
HinfI	GANTC	3 cut(s)	33, 52, 463
Hpy188I	TCNGA	2 cut(s)	231, 297
Hpy188III	TCNNGA	6 cut(s)	37, 56, 149, 175, 184, 214
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	2 cut(s)	98, 551
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	7 cut(s)	79, 131, 140, 289, 338, 376, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 341
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	104, 332, 480, 493
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	4 cut(s)	171, 210, 226, 304
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	401
Lsp1109I	GCAGC	5 cut(s)	143, 273, 301, 322, 400
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	299
MalI	GATC	4 cut(s)	173, 212, 228, 306
MboI	GATC	4 cut(s)	171, 210, 226, 304
MboII	GAAGA	5 cut(s)	71, 110, 211, 250, 466
MfeI	CAATTG	2 cut(s)	135, 353
MhlI	GDGCHC	3 cut(s)	48, 118, 636
MluCI	AATT	7 cut(s)	135, 178, 290, 353, 502, 511, 527
MlyI	GAGTC	2 cut(s)	27, 46
MmeI	TCCRAC	3 cut(s)	112, 282, 288
MnlI	CCTC	7 cut(s)	55, 266, 278, 432, 450, 453, 486
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	2 cut(s)	99, 494
MspA1I	CMGCKG	1 cut(s)	286
MspR9I	CCNGG	4 cut(s)	30, 49, 272, 557
MunI	CAATTG	2 cut(s)	135, 353
MvaI	CCWGG	4 cut(s)	30, 49, 272, 557
MwoI	GCNNNNNNNGC	2 cut(s)	137, 341
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	4 cut(s)	171, 210, 226, 304
NlaIII	CATG	4 cut(s)	104, 332, 480, 493
NlaIV	GGNNCC	3 cut(s)	46, 397, 482
NmeAIII	GCCGAG	1 cut(s)	372
NsbI	TGCGCA	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	560
PciSI	GCTCTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	463
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	6 cut(s)	133, 285, 288, 316, 337, 415
PleI	GAGTC	2 cut(s)	27, 46
PpsI	GAGTC	2 cut(s)	27, 46
PpuMI	RGGWCCY	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	4 cut(s)	28, 47, 270, 555
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	4 cut(s)	28, 47, 270, 555
PspN4I	GGNNCC	3 cut(s)	46, 397, 482
PspOMI	GGGCCC	1 cut(s)	44
PspPI	GGNCC	3 cut(s)	44, 45, 274
PspPPI	RGGWCCY	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	344
RsaI	GTAC	4 cut(s)	83, 390, 548, 618
RsaNI	GTAC	4 cut(s)	82, 389, 547, 617
RseI	CAYNNNNRTG	2 cut(s)	99, 494
SacI	GAGCTC	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	6 cut(s)	132, 284, 287, 315, 336, 414
Sau3AI	GATC	4 cut(s)	171, 210, 226, 304
Sau96I	GGNCC	3 cut(s)	44, 45, 274
ScaI	AGTACT	1 cut(s)	548
SchI	GAGTC	2 cut(s)	27, 46
ScrFI	CCNGG	4 cut(s)	30, 49, 272, 557
SduI	GDGCHC	3 cut(s)	48, 118, 636
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	2 cut(s)	336, 345
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	2 cut(s)	99, 494
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	7 cut(s)	135, 178, 290, 353, 502, 511, 527
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	118
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	4 cut(s)	28, 47, 270, 555
TaaI	ACNGT	2 cut(s)	98, 551
TaiI	ACGT	1 cut(s)	302
TasI	AATT	7 cut(s)	135, 178, 290, 353, 502, 511, 527
TatI	WGTACW	3 cut(s)	81, 388, 546
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	627
TseI	GCWGC	5 cut(s)	131, 286, 314, 335, 413
TspDTI	ATGAA	3 cut(s)	39, 81, 453
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	3 cut(s)	178, 502, 527
XbaI	TCTAGA	1 cut(s)	148
XspI	CTAG	1 cut(s)	149
ZrmI	AGTACT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.