Rmu_sc0003371.1_g000006
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003371.1
N/A
Physical Location & Seq
Reverse (-)
25478 .. 28442
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003371.1_g000006.1.cds

Sequence Viewer

Length: 738 bp
atgcttatacggcgtcatcaagtgtcggtgggcagaggggtttctgggttttgctacatttttcttgttgagtggaaatcgccggaaaatcgatcagggtcgaggaacagtgacgcgcagtcttgggttgtcgcatgcgaaggaggacgatggtgcatggctgggattttggtgaggtttgggtcggaattgtgttctggttcgaagggtggaggcggtgtcaagaggtggtggccggaaccgatgttttctggtggttgcagagggaaggagaagggagagggaatgagaggtcgggagagagagagagagagaggatgcggccgacagagggagagagggagagaaatgagactagggtttccaagttttctatttatacttgtaaaagatcgtgttaatggaaagcaagcagcaagtgccattgattatgtcgatgagattgatcaaaacaatgatggcctggacgacattgctgaagtgatgactatccctccacctgtagtagcagaaggttccaatcaagttccaaggaataggagaaggaagagaacaggtgcatatgtactagggtcgacacaaatggttggtgcaatgtcgaagactgctaaagcaatggataagcttgtgagaagtcttgtagaacttgatcccatgcgtcaagcagtctatgatgaggtatccaaagttgaagttgaaagctctaatagagaagcccagataatacagaggaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

245

Amino Acids

27.38

Weight (kDa)

9.62

Isoelectric Point (pI)

44.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 575
AccII CGCG 1 cut(s) 116
AciI CCGC 2 cut(s) 216, 321
AclWI GGATC 1 cut(s) 644
AcoI YGGCCR 2 cut(s) 233, 322
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 567
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 2 cut(s) 692, 698
AhdI GACNNNNNGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 2 cut(s) 625, 702
AluI AGCT 2 cut(s) 625, 702
Alw26I GTCTC 1 cut(s) 346
AlwI GGATC 1 cut(s) 644
AoxI GGCC 3 cut(s) 233, 322, 460
ApeKI GCWGC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 184
AsuII TTCGAA 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 608
BbvI GCAGC 1 cut(s) 425
BccI CCATC 2 cut(s) 144, 452
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 464
BciVI GTATCC 1 cut(s) 691
BclI TGATCA 1 cut(s) 445
BcoDI GTCTC 1 cut(s) 346
BfaI CTAG 2 cut(s) 356, 569
BfmI CTRYAG 1 cut(s) 501
BfuI GTATCC 1 cut(s) 691
BisI GCNGC 2 cut(s) 322, 414
BlsI GCNGC 2 cut(s) 323, 415
Bme1390I CCNGG 1 cut(s) 464
BmeRI GACNNNNNGTC 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 240, 517
BmrFI CCNGG 1 cut(s) 464
BmsI GCATC 1 cut(s) 308
BpiI GAAGAC 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 203
Bsa29I ATCGAT 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 488
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 530
BsaXI ACNNNNNCTCC 4 cut(s) 204, 234, 478, 508
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse3DI GCAATG 3 cut(s) 471, 600, 621
Bse8I GATNNNNATC 1 cut(s) 488
BseBI CCWGG 1 cut(s) 464
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 530
BseGI GGATG 1 cut(s) 323
BseJI GATNNNNATC 1 cut(s) 488
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 3 cut(s) 471, 600, 621
BseX3I CGGCCG 1 cut(s) 322
BseXI GCAGC 1 cut(s) 425
BseYI CCCAGC 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 3 cut(s) 235, 324, 462
BshVI ATCGAT 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 325
BsiSI CCGG 2 cut(s) 83, 236
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 346
BsnI GGCC 3 cut(s) 235, 324, 462
Bsp119I TTCGAA 1 cut(s) 203
Bsp143I GATC 4 cut(s) 92, 391, 445, 649
BspACI CCGC 2 cut(s) 216, 321
BspANI GGCC 3 cut(s) 235, 324, 462
BspDI ATCGAT 1 cut(s) 91
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 240, 517
BspPI GGATC 1 cut(s) 644
BspT104I TTCGAA 1 cut(s) 203
BsrDI GCAATG 3 cut(s) 471, 600, 621
BssECI CCNNGG 1 cut(s) 530
BssMI GATC 4 cut(s) 92, 391, 445, 649
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 542
BstACI GRCGYC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 136, 411
BstF5I GGATG 1 cut(s) 323
BstFNI CGCG 1 cut(s) 116
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 4 cut(s) 95, 394, 448, 652
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 4 cut(s) 92, 391, 445, 649
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 2 cut(s) 10, 419
BstNI CCWGG 1 cut(s) 464
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 462
BstSFI CTRYAG 1 cut(s) 501
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 608
BstZI CGGCCG 1 cut(s) 322
Bsu15I ATCGAT 1 cut(s) 91
BsuI GTATCC 1 cut(s) 691
BsuRI GGCC 3 cut(s) 235, 324, 462
BsuTUI ATCGAT 1 cut(s) 91
BtsCI GGATG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 136, 411
CfoI GCGC 1 cut(s) 118
ClaI ATCGAT 1 cut(s) 91
CseI GACGC 3 cut(s) 2, 122, 647
Csp6I GTAC 1 cut(s) 566
CviAII CATG 3 cut(s) 135, 157, 655
CviJI RGCY 7 cut(s) 161, 235, 324, 462, 625, 702, 716
CviKI_1 RGCY 7 cut(s) 161, 235, 324, 462, 625, 702, 716
CviQI GTAC 1 cut(s) 566
DpnI GATC 4 cut(s) 94, 393, 447, 651
DpnII GATC 4 cut(s) 92, 391, 445, 649
DriI GACNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 2 cut(s) 233, 322
EagI CGGCCG 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 542
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 542
EclXI CGGCCG 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 530
Eco52I CGGCCG 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 530
FaeI CATG 3 cut(s) 138, 160, 658
FaiI YATR 9 cut(s) 8, 136, 158, 380, 432, 562, 564, 656, 672
FatI CATG 3 cut(s) 134, 156, 654
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 575
Fnu4HI GCNGC 2 cut(s) 322, 414
FokI GGATG 1 cut(s) 330
Fsp4HI GCNGC 2 cut(s) 322, 414
FspBI CTAG 2 cut(s) 356, 569
GlaI GCGC 1 cut(s) 117
GluI GCNGC 2 cut(s) 322, 414
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 3 cut(s) 235, 324, 462
HapII CCGG 2 cut(s) 83, 236
HgaI GACGC 3 cut(s) 2, 122, 647
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 3 cut(s) 138, 160, 658
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HindIII AAGCTT 1 cut(s) 623
HpaII CCGG 2 cut(s) 83, 236
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 223, 296
Hpy8I GTNNAC 1 cut(s) 576
HpyAV CCTTC 6 cut(s) 134, 199, 262, 268, 506, 537
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 156, 261, 560, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 419
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 3 cut(s) 138, 160, 658
HspAI GCGC 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 4 cut(s) 92, 391, 445, 649
Lsp1109I GCAGC 1 cut(s) 425
LweI GCATC 1 cut(s) 308
MaeI CTAG 2 cut(s) 356, 569
MaeIII GTNAC 1 cut(s) 110
MalI GATC 4 cut(s) 94, 393, 447, 651
MboI GATC 4 cut(s) 92, 391, 445, 649
MboII GAAGA 2 cut(s) 559, 613
MluCI AATT 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 165
MseI TTAA 1 cut(s) 399
MspI CCGG 2 cut(s) 83, 236
MspR9I CCNGG 1 cut(s) 464
MvaI CCWGG 1 cut(s) 464
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 10, 419
NdeI CATATG 1 cut(s) 562
NdeII GATC 4 cut(s) 92, 391, 445, 649
NlaIII CATG 3 cut(s) 138, 160, 658
NlaIV GGNNCC 2 cut(s) 240, 517
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 138
NspV TTCGAA 1 cut(s) 203
PaeI GCATGC 1 cut(s) 138
PkrI GCNGC 2 cut(s) 323, 415
Psp6I CCWGG 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 2 cut(s) 240, 517
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
SalI GTCGAC 1 cut(s) 574
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 2 cut(s) 322, 414
Sau3AI GATC 4 cut(s) 92, 391, 445, 649
ScrFI CCNGG 1 cut(s) 464
SetI ASST 9 cut(s) 179, 230, 295, 502, 517, 559, 627, 681, 704
SfaNI GCATC 1 cut(s) 308
SfcI CTRYAG 1 cut(s) 501
SfuI TTCGAA 1 cut(s) 203
SphI GCATGC 1 cut(s) 138
Sse9I AATT 1 cut(s) 188
SsiI CCGC 2 cut(s) 216, 321
SspMI CTAG 2 cut(s) 356, 569
StyD4I CCNGG 1 cut(s) 462
StyI CCWWGG 1 cut(s) 530
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 6 cut(s) 91, 101, 203, 435, 575, 599
TasI AATT 1 cut(s) 188
TatI WGTACW 1 cut(s) 565
TauI GCSGC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 110
TspRI CASTG 1 cut(s) 115
XceI RCATGY 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 575
XspI CTAG 2 cut(s) 356, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.