Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002822.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

89093 .. 89932

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002822.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgtatcttctctccgaaaacaaaaaggaagagatttcttgcagcgaggaagatgaagaagaagacgatgagggcttcaatgaggacatggaggctctaaggcgtgcctgtatgctcactggcagagaccccgatgacattgacatagacaatgatattgacattgacatggacaacgatattgatgaccttgagttggtccacaaaattaagagccaattctcggattcttcaacttgcgagcctcttcctcctagtactttgccactggccagagtctccaacgactacgaaacgctgcttgccattcaaaaacgtttctctgcctacgagaacaatgttcagaaaataagtgcccaacagattgaactttcttgttgcagcaaatcagtagaggaaacttgcaatgtagagacacctacaactgacaattcttgcaggccatatatatctccacccgaaattgcaggcttcccaaagtctgcactggcttttgtggatgccattaataagaacaggtcatgtcagaagtttcttcgaagtaagctaatacaaatccaagcgaaaatagaggagaacaacaaactgaaacagcgtgtcaaaatccttagagactttcaacttcattgcaaaagaagaacaggagaggcattgtcccaaaagaaggatcctcgtgtgcagttaattttaatgaaaagaccaagagggacttcaagcgattcaataaagcctcctcatgacgacgacgatggagctatgtcttatggccctgcagaaaattcacatgttgctaactacagaatgactatgttgacaaaatttcaggaccgaaaaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022402 GO:0022607 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048285 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051225 GO:0051252 GO:0060255 GO:0065007 GO:0070925 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902850 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

279

Amino Acids

31.83

Weight (kDa)

4.93

Isoelectric Point (pI)

59.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	316
AclWI	GGATC	2 cut(s)	662, 675
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	778, 818
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	3 cut(s)	196, 223, 664
AflIII	ACRYGT	1 cut(s)	784
AgsI	TTSAA	7 cut(s)	79, 234, 311, 368, 620, 714, 723
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	2 cut(s)	547, 755
AluI	AGCT	2 cut(s)	547, 755
Alw26I	GTCTC	4 cut(s)	120, 283, 407, 606
AlwI	GGATC	2 cut(s)	662, 675
AoxI	GGCC	3 cut(s)	270, 440, 766
ApeKI	GCWGC	3 cut(s)	42, 298, 381
ApoI	RAATTY	2 cut(s)	778, 818
AseI	ATTAAT	1 cut(s)	507
AspS9I	GGNCC	3 cut(s)	199, 767, 826
AsuII	TTCGAA	1 cut(s)	538
AvaII	GGWCC	2 cut(s)	199, 826
BaeGI	GKGCMC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	667
BauI	CACGAG	1 cut(s)	672
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	54, 285, 393
BccI	CCATC	1 cut(s)	743
BcoDI	GTCTC	4 cut(s)	120, 283, 407, 606
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	2 cut(s)	771, 796
BisI	GCNGC	3 cut(s)	43, 299, 382
BlsI	GCNGC	3 cut(s)	44, 300, 383
BmcAI	AGTACT	1 cut(s)	259
Bme18I	GGWCC	2 cut(s)	199, 826
BmgT120I	GGNCC	3 cut(s)	199, 767, 826
BmiI	GGNNCC	1 cut(s)	669
BmsI	GCATC	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 223, 664
Bse1I	ACTGG	3 cut(s)	124, 273, 492
Bse3DI	GCAATG	2 cut(s)	412, 625
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	3 cut(s)	196, 223, 664
BseMI	GCAATG	2 cut(s)	412, 625
BseNI	ACTGG	3 cut(s)	124, 273, 492
BseRI	GAGGAG	2 cut(s)	587, 723
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	54, 285, 393
BsgI	GTGCAG	2 cut(s)	468, 698
BshFI	GGCC	3 cut(s)	272, 442, 768
BslFI	GGGAC	2 cut(s)	640, 721
BslI	CCNNNNNNNGG	3 cut(s)	196, 223, 664
BsmAI	GTCTC	4 cut(s)	120, 283, 407, 606
BsmFI	GGGAC	2 cut(s)	640, 721
BsnI	GGCC	3 cut(s)	272, 442, 768
Bso31I	GGTCTC	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	1 cut(s)	667
BspANI	GGCC	3 cut(s)	272, 442, 768
BspHI	TCATGA	1 cut(s)	736
BspLI	GGNNCC	1 cut(s)	669
BspMAI	CTGCAG	1 cut(s)	775
BspPI	GGATC	2 cut(s)	662, 675
BspT104I	TTCGAA	1 cut(s)	538
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	412, 625
BsrI	ACTGG	3 cut(s)	124, 273, 492
BssMI	GATC	1 cut(s)	667
BssSI	CACGAG	1 cut(s)	672
Bst2BI	CACGAG	1 cut(s)	672
Bst6I	CTCTTC	2 cut(s)	24, 252
BstBI	TTCGAA	1 cut(s)	538
BstC8I	GCNNGC	5 cut(s)	105, 242, 303, 440, 469
BstDEI	CTNAG	2 cut(s)	98, 608
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	1 cut(s)	670
BstMAI	GTCTC	4 cut(s)	120, 283, 407, 606
BstMBI	GATC	1 cut(s)	667
BstNSI	RCATGY	1 cut(s)	788
BstSFI	CTRYAG	2 cut(s)	771, 796
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	3 cut(s)	54, 285, 393
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BsuRI	GGCC	3 cut(s)	272, 442, 768
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	3 cut(s)	117, 266, 485
Cac8I	GCNNGC	5 cut(s)	105, 242, 303, 440, 469
CciI	TCATGA	1 cut(s)	736
Cfr13I	GGNCC	3 cut(s)	199, 767, 826
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	5 cut(s)	88, 169, 522, 737, 785
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	98, 608
DpnI	GATC	1 cut(s)	669
DpnII	GATC	1 cut(s)	667
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	24, 252
EarI	CTCTTC	2 cut(s)	24, 252
Eco31I	GGTCTC	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	199, 826
FaeI	CATG	5 cut(s)	91, 172, 525, 740, 788
FalI	AAGNNNNNCTT	2 cut(s)	694, 726
FaqI	GGGAC	2 cut(s)	640, 721
FatI	CATG	5 cut(s)	87, 168, 521, 736, 784
Fnu4HI	GCNGC	3 cut(s)	43, 299, 382
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	3 cut(s)	43, 299, 382
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	3 cut(s)	43, 299, 382
HaeIII	GGCC	3 cut(s)	272, 442, 768
Hin1II	CATG	5 cut(s)	91, 172, 525, 740, 788
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HinfI	GANTC	3 cut(s)	227, 276, 719
Hpy166II	GTNNAC	2 cut(s)	202, 813
Hpy188I	TCNGA	4 cut(s)	16, 226, 345, 528
Hpy188III	TCNNGA	2 cut(s)	737, 824
Hpy8I	GTNNAC	2 cut(s)	202, 813
Hpy99I	CGWCG	2 cut(s)	746, 749
HpyAV	CCTTC	1 cut(s)	658
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	9 cut(s)	42, 381, 405, 438, 467, 485, 630, 679, 773
HpyF3I	CTNAG	2 cut(s)	98, 608
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	5 cut(s)	91, 172, 525, 740, 788
Kzo9I	GATC	1 cut(s)	667
LmnI	GCTCC	1 cut(s)	752
Lsp1109I	GCAGC	3 cut(s)	54, 285, 393
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	316
MalI	GATC	1 cut(s)	669
MboI	GATC	1 cut(s)	667
MboII	GAAGA	9 cut(s)	41, 62, 68, 71, 74, 222, 239, 527, 648
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	1 cut(s)	358
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	7 cut(s)	207, 218, 430, 462, 684, 778, 818
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	306
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	4 cut(s)	210, 507, 683, 689
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	272
NdeII	GATC	1 cut(s)	667
NlaIII	CATG	5 cut(s)	91, 172, 525, 740, 788
NlaIV	GGNNCC	1 cut(s)	669
NspI	RCATGY	1 cut(s)	788
NspV	TTCGAA	1 cut(s)	538
PagI	TCATGA	1 cut(s)	736
PciI	ACATGT	1 cut(s)	784
PfeI	GAWTC	2 cut(s)	227, 719
PkrI	GCNGC	3 cut(s)	44, 300, 383
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PscI	ACATGT	1 cut(s)	784
PshBI	ATTAAT	1 cut(s)	507
Psp1406I	AACGTT	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	669
PspPI	GGNCC	3 cut(s)	199, 767, 826
PstI	CTGCAG	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	4 cut(s)	210, 507, 683, 689
SatI	GCNGC	3 cut(s)	43, 299, 382
Sau3AI	GATC	1 cut(s)	667
Sau96I	GGNCC	3 cut(s)	199, 767, 826
ScaI	AGTACT	1 cut(s)	259
SchI	GAGTC	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	6 cut(s)	192, 319, 421, 521, 549, 757
SfaNI	GCATC	1 cut(s)	490
SfcI	CTRYAG	2 cut(s)	771, 796
SfuI	TTCGAA	1 cut(s)	538
SinI	GGWCC	2 cut(s)	199, 826
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	7 cut(s)	207, 218, 430, 462, 684, 778, 818
SspMI	CTAG	1 cut(s)	255
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	538
TasI	AATT	7 cut(s)	207, 218, 430, 462, 684, 778, 818
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	227, 719
Tru1I	TTAA	4 cut(s)	210, 507, 683, 689
Tru9I	TTAA	4 cut(s)	210, 507, 683, 689
TscAI	CASTG	3 cut(s)	124, 273, 492
TseI	GCWGC	3 cut(s)	42, 298, 381
TspDTI	ATGAA	3 cut(s)	69, 614, 707
TspRI	CASTG	3 cut(s)	124, 273, 492
VpaK11BI	GGWCC	2 cut(s)	199, 826
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	2 cut(s)	778, 818
XceI	RCATGY	1 cut(s)	788
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.