Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002316.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

129747 .. 130636

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002316.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgaggcagcccaagccgcccactgacgcaggcccaagcctcagcctcagctcaggagcccaaaccgcagccgcagcggcagcccaagccactgccatgtcaacctgccacgtcagcatcagggacccacagacacgtcagcagtcaactgtcaacccgatcaaccgtcaacagttggtcaacgacctccggagacttttccggcgtcttttctggctattttttcctgtcaaattttccggcgacctatttcaagcgattacactcaggaattttatatgttttcgtggtagccttttacgctctgaaactaaccctaatttcttgtactctttcaggatgaataacctgaacaaattggactttgttctattgggaacaactggctctaaatatcacaggtgggttcgtgatgtccgccagcatctcaaggccgatggaatcctggatgcgattctcgagcctagccaggacgtgctaactattgagcaagctcaagctttggaagcaaatagaacagccttagaggcaaataaggcgaaagccatcatcctaatcactcgtcatatggatgattcgctccagtacgagtgtatgaatgaagaagaccccagaaggctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

207

Amino Acids

23.53

Weight (kDa)

9.55

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	189
AciI	CCGC	5 cut(s)	17, 66, 72, 77, 418
AcsI	RAATTY	2 cut(s)	233, 271
AcyI	GRCGYC	1 cut(s)	205
AfaI	GTAC	2 cut(s)	329, 587
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	254
AjiI	CACGTC	3 cut(s)	112, 137, 475
AjnI	CCWGG	2 cut(s)	444, 468
AluBI	AGCT	3 cut(s)	51, 494, 500
AluI	AGCT	3 cut(s)	51, 494, 500
Alw26I	GTCTC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	2 cut(s)	31, 432
ApeKI	GCWGC	4 cut(s)	7, 68, 74, 80
ApoI	RAATTY	2 cut(s)	233, 271
AspS9I	GGNCC	2 cut(s)	32, 124
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	612
BbvCI	CCTCAGC	2 cut(s)	41, 47
BbvI	GCAGC	4 cut(s)	19, 80, 86, 92
BccI	CCATC	2 cut(s)	431, 554
BciT130I	CCWGG	2 cut(s)	446, 470
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	113
BglI	GCCNNNNNGGC	2 cut(s)	77, 527
BisI	GCNGC	7 cut(s)	8, 17, 69, 72, 75, 78, 81
BlsI	GCNGC	7 cut(s)	9, 18, 70, 73, 76, 79, 82
Bme1390I	CCNGG	2 cut(s)	446, 470
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	458
BmgBI	CACGTC	3 cut(s)	112, 137, 475
BmgT120I	GGNCC	2 cut(s)	32, 124
BmiI	GGNNCC	3 cut(s)	58, 125, 126
BmrFI	CCNGG	2 cut(s)	446, 470
BmsI	GCATC	3 cut(s)	126, 433, 439
BpiI	GAAGAC	1 cut(s)	612
BpmI	CTGGAG	1 cut(s)	566
Bpu10I	CCTNAGC	3 cut(s)	41, 47, 52
BpuEI	CTTGAG	2 cut(s)	413, 480
BsaHI	GRCGYC	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	388, 583
BseAI	TCCGGA	1 cut(s)	189
BseBI	CCWGG	2 cut(s)	446, 470
BseGI	GGATG	4 cut(s)	345, 454, 549, 577
BseMII	CTCAG	4 cut(s)	55, 61, 66, 280
BseNI	ACTGG	2 cut(s)	388, 583
BseXI	GCAGC	4 cut(s)	19, 80, 86, 92
BshFI	GGCC	2 cut(s)	33, 434
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	3 cut(s)	190, 202, 240
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	33, 434
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp13I	TCCGGA	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	5 cut(s)	17, 66, 72, 77, 418
BspANI	GGCC	2 cut(s)	33, 434
BspCNI	CTCAG	4 cut(s)	54, 60, 65, 279
BspEI	TCCGGA	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	58, 125, 126
BspMI	ACCTGC	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	388, 583
BssMI	GATC	1 cut(s)	159
BssNI	GRCGYC	1 cut(s)	205
Bst2UI	CCWGG	2 cut(s)	446, 470
Bst4CI	ACNGT	3 cut(s)	151, 167, 174
BstACI	GRCGYC	1 cut(s)	205
BstC8I	GCNNGC	3 cut(s)	31, 422, 492
BstDEI	CTNAG	5 cut(s)	41, 47, 52, 266, 523
BstF5I	GGATG	4 cut(s)	345, 454, 549, 577
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	159
BstNI	CCWGG	2 cut(s)	446, 470
BstSCI	CCNGG	2 cut(s)	444, 468
BstV1I	GCAGC	4 cut(s)	19, 80, 86, 92
BstV2I	GAAGAC	1 cut(s)	612
BsuRI	GGCC	2 cut(s)	33, 434
BtrI	CACGTC	3 cut(s)	112, 137, 475
BtsCI	GGATG	4 cut(s)	345, 454, 549, 577
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	21, 90
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	3 cut(s)	31, 422, 492
Cfr13I	GGNCC	2 cut(s)	32, 124
CseI	GACGC	2 cut(s)	35, 194
Csp6I	GTAC	2 cut(s)	328, 586
CviAII	CATG	1 cut(s)	97
CviQI	GTAC	2 cut(s)	328, 586
DdeI	CTNAG	5 cut(s)	41, 47, 52, 266, 523
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	124
Eco88I	CYCGRG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	444, 468
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	1 cut(s)	100
FaiI	YATR	6 cut(s)	98, 278, 280, 567, 569, 596
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	96
FauNDI	CATATG	1 cut(s)	567
Fnu4HI	GCNGC	7 cut(s)	8, 17, 69, 72, 75, 78, 81
FokI	GGATG	4 cut(s)	352, 461, 536, 584
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	7 cut(s)	8, 17, 69, 72, 75, 78, 81
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	7 cut(s)	8, 17, 69, 72, 75, 78, 81
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	2 cut(s)	33, 434
HapII	CCGG	3 cut(s)	190, 202, 240
HgaI	GACGC	2 cut(s)	35, 194
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	100
HincII	GTYRAC	5 cut(s)	102, 147, 154, 170, 181
HindII	GTYRAC	5 cut(s)	102, 147, 154, 170, 181
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	3 cut(s)	441, 454, 575
HpaII	CCGG	3 cut(s)	190, 202, 240
Hpy166II	GTNNAC	5 cut(s)	102, 147, 154, 170, 181
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	6 cut(s)	54, 190, 268, 337, 410, 458
Hpy8I	GTNNAC	5 cut(s)	102, 147, 154, 170, 181
HpyAV	CCTTC	1 cut(s)	609
HpyCH4III	ACNGT	3 cut(s)	151, 167, 174
HpyCH4IV	ACGT	3 cut(s)	111, 136, 474
HpyF3I	CTNAG	5 cut(s)	41, 47, 52, 266, 523
HpySE526I	ACGT	3 cut(s)	111, 136, 474
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	1 cut(s)	100
KflI	GGGWCCC	1 cut(s)	124
Kpn2I	TCCGGA	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	56, 585
Lsp1109I	GCAGC	4 cut(s)	19, 80, 86, 92
LweI	GCATC	3 cut(s)	126, 433, 439
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	3 cut(s)	111, 136, 474
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	2 cut(s)	614, 617
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	4 cut(s)	233, 271, 319, 356
MnlI	CCTC	4 cut(s)	50, 56, 197, 520
MroI	TCCGGA	1 cut(s)	189
MslI	CAYNNNNRTG	2 cut(s)	95, 570
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	3 cut(s)	190, 202, 240
MspR9I	CCNGG	2 cut(s)	446, 470
MvaI	CCWGG	2 cut(s)	446, 470
NdeI	CATATG	1 cut(s)	567
NdeII	GATC	1 cut(s)	159
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	3 cut(s)	58, 125, 126
PaeR7I	CTCGAG	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	441, 454, 575
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	7 cut(s)	9, 18, 70, 73, 76, 79, 82
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	444, 468
PspGI	CCWGG	2 cut(s)	444, 468
PspN4I	GGNNCC	3 cut(s)	58, 125, 126
PspPI	GGNCC	2 cut(s)	32, 124
PspPPI	RGGWCCY	1 cut(s)	124
RsaI	GTAC	2 cut(s)	329, 587
RsaNI	GTAC	2 cut(s)	328, 586
RseI	CAYNNNNRTG	2 cut(s)	95, 570
SatI	GCNGC	7 cut(s)	8, 17, 69, 72, 75, 78, 81
Sau3AI	GATC	1 cut(s)	159
Sau96I	GGNCC	2 cut(s)	32, 124
ScrFI	CCNGG	2 cut(s)	446, 470
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	3 cut(s)	126, 433, 439
Sfr274I	CTCGAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	458
SmiMI	CAYNNNNRTG	2 cut(s)	95, 570
SmlI	CTYRAG	3 cut(s)	428, 458, 495
SmoI	CTYRAG	3 cut(s)	428, 458, 495
Sse9I	AATT	4 cut(s)	233, 271, 319, 356
SsiI	CCGC	5 cut(s)	17, 66, 72, 77, 418
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	444, 468
TaaI	ACNGT	3 cut(s)	151, 167, 174
TaiI	ACGT	3 cut(s)	114, 139, 477
TaqI	TCGA	1 cut(s)	459
TasI	AATT	4 cut(s)	233, 271, 319, 356
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	3 cut(s)	19, 74, 80
TfiI	GAWTC	3 cut(s)	441, 454, 575
TscAI	CASTG	2 cut(s)	28, 97
TseI	GCWGC	4 cut(s)	7, 68, 74, 80
TspDTI	ATGAA	3 cut(s)	356, 611, 615
TspRI	CASTG	2 cut(s)	28, 97
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	2 cut(s)	233, 271
XhoI	CTCGAG	1 cut(s)	458
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.