Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001791.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

111322 .. 115397

Gene Structure 4076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001791.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgagtaacctgaacaaattggactttgctccattgggaacaactggctctggatatcacaggtgggttcgtgatatccgccagcatctcaaggctataggaatcttggatatgattctcgagcctagccaggacgtgataactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagccatcatcctaatgactcggtggatttatagaggcgagctcaggttgggggaggctccaggcgtttgtttcgctattcaaggcccaccgcgattcggatttggtatggggagtttggtcatcgatctcactattccggcaatggggatgtccaaatggtctggcccgtttactcgacgatggtacatggtgttatgccatgtaaatgacgtcattcctgaggacgaggacttgttggttcaattctggtttacttatggtgtcgattcgctgacgagcgatcctttacatgtggtttggtactttttggacatggtgttgaagaggacgcaaccttctttgcggttgattatgaggtattattggaacattcgaggtcatatgatcaatgtagccttgaaaatggtgtatcgtggttacagtttgggctctgtaatcgaggttttttgggttttggttcatgtcctccccattgtatgctttctggttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

232

Amino Acids

26.56

Weight (kDa)

7.76

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	417
AccII	CGCG	1 cut(s)	295
AciI	CCGC	3 cut(s)	79, 293, 547
AclWI	GGATC	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	2 cut(s)	389, 506
AfiI	CCNNNNNNNGG	2 cut(s)	299, 347
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	4 cut(s)	284, 446, 526, 604
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	129, 262
AluBI	AGCT	3 cut(s)	155, 161, 244
AluI	AGCT	3 cut(s)	155, 161, 244
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	286, 367
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	287, 368
AvaI	CYCGRG	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	423
BanII	GRGCYC	2 cut(s)	246, 635
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	2 cut(s)	215, 378
BciT130I	CCWGG	2 cut(s)	131, 264
BclI	TGATCA	1 cut(s)	588
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	96
BglI	GCCNNNNNGGC	1 cut(s)	188
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	131, 264
BmeT110I	CYCGRG	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	287, 368
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	2 cut(s)	131, 264
BmsI	GCATC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	228, 260
BpmI	CTGGAG	1 cut(s)	246
Bpu10I	CCTNAGC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	74, 141
Bsa29I	ATCGAT	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 347
Bse1I	ACTGG	1 cut(s)	49
Bse21I	CCTNAGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	131, 264
BseCI	ATCGAT	1 cut(s)	327
BseGI	GGATG	2 cut(s)	210, 357
BseLI	CCNNNNNNNGG	2 cut(s)	299, 347
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	259, 414
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	288, 369
BshVI	ATCGAT	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	299, 347
BsnI	GGCC	2 cut(s)	288, 369
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	246, 635
Bsp143I	GATC	3 cut(s)	328, 484, 588
BspACI	CCGC	3 cut(s)	79, 293, 547
BspANI	GGCC	2 cut(s)	288, 369
BspCNI	CTCAG	2 cut(s)	258, 415
BspDI	ATCGAT	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	49
BssMI	GATC	3 cut(s)	328, 484, 588
BssNI	GRCGYC	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	131, 264
Bst4CI	ACNGT	2 cut(s)	145, 626
Bst6I	CTCTTC	1 cut(s)	521
BstACI	GRCGYC	1 cut(s)	414
BstC8I	GCNNGC	3 cut(s)	83, 153, 242
BstDEI	CTNAG	3 cut(s)	184, 245, 423
BstF5I	GGATG	2 cut(s)	210, 357
BstFNI	CGCG	1 cut(s)	295
BstKTI	GATC	3 cut(s)	331, 487, 591
BstMBI	GATC	3 cut(s)	328, 484, 588
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 176, 188, 197
BstNI	CCWGG	2 cut(s)	131, 264
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	2 cut(s)	129, 262
BstSFI	CTRYAG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	191
Bsu15I	ATCGAT	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	288, 369
BsuTUI	ATCGAT	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	210, 357
Cac8I	GCNNGC	3 cut(s)	83, 153, 242
Cfr13I	GGNCC	2 cut(s)	287, 368
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	388, 505
CviAII	CATG	5 cut(s)	391, 404, 494, 517, 665
CviQI	GTAC	2 cut(s)	388, 505
DdeI	CTNAG	3 cut(s)	184, 245, 423
DpnI	GATC	3 cut(s)	330, 486, 590
DpnII	GATC	3 cut(s)	328, 484, 588
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	246, 635
Eco32I	GATATC	2 cut(s)	56, 76
Eco53kI	GAGCTC	1 cut(s)	244
Eco81I	CCTNAGG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	129, 262
EcoRV	GATATC	2 cut(s)	56, 76
EcoT38I	GRGCYC	2 cut(s)	246, 635
FaeI	CATG	5 cut(s)	394, 407, 497, 520, 668
FatI	CATG	5 cut(s)	390, 403, 493, 516, 664
FauNDI	CATATG	1 cut(s)	585
FbaI	TGATCA	1 cut(s)	588
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	2 cut(s)	197, 364
FriOI	GRGCYC	2 cut(s)	246, 635
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	288, 369
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	1 cut(s)	541
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	5 cut(s)	394, 407, 497, 520, 668
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	5 cut(s)	102, 115, 220, 297, 470
HpaII	CCGG	1 cut(s)	341
Hpy166II	GTNNAC	2 cut(s)	375, 456
Hpy188I	TCNGA	1 cut(s)	302
Hpy188III	TCNNGA	4 cut(s)	51, 71, 119, 422
Hpy8I	GTNNAC	2 cut(s)	375, 456
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	1 cut(s)	549
HpyCH4III	ACNGT	2 cut(s)	145, 626
HpyCH4IV	ACGT	2 cut(s)	135, 414
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 176, 188, 197
HpyF3I	CTNAG	3 cut(s)	184, 245, 423
HpySE526I	ACGT	2 cut(s)	135, 414
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	5 cut(s)	394, 407, 497, 520, 668
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	328, 484, 588
LmnI	GCTCC	2 cut(s)	34, 265
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	2 cut(s)	135, 414
MaeIII	GTNAC	2 cut(s)	5, 620
MalI	GATC	3 cut(s)	330, 486, 590
MboI	GATC	3 cut(s)	328, 484, 588
MboII	GAAGA	1 cut(s)	538
MhlI	GDGCHC	2 cut(s)	246, 635
MluCI	AATT	2 cut(s)	17, 446
MlyI	GAGTC	1 cut(s)	214
MslI	CAYNNNNRTG	2 cut(s)	215, 408
MspI	CCGG	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	131, 264
MvaI	CCWGG	2 cut(s)	131, 264
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	4 cut(s)	167, 176, 188, 197
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	3 cut(s)	328, 484, 588
NlaIII	CATG	5 cut(s)	394, 407, 497, 520, 668
NlaIV	GGNNCC	1 cut(s)	261
NspI	RCATGY	1 cut(s)	497
PaeR7I	CTCGAG	1 cut(s)	119
PciI	ACATGT	1 cut(s)	493
PfeI	GAWTC	4 cut(s)	102, 115, 297, 470
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PscI	ACATGT	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	129, 262
PspGI	CCWGG	2 cut(s)	129, 262
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	287, 368
RsaI	GTAC	2 cut(s)	389, 506
RsaNI	GTAC	2 cut(s)	388, 505
RseI	CAYNNNNRTG	2 cut(s)	215, 408
SacI	GAGCTC	1 cut(s)	246
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	328, 484, 588
Sau96I	GGNCC	2 cut(s)	287, 368
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	131, 264
SduI	GDGCHC	2 cut(s)	246, 635
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	215, 408
SmlI	CTYRAG	3 cut(s)	89, 119, 156
SmoI	CTYRAG	3 cut(s)	89, 119, 156
Sse9I	AATT	2 cut(s)	17, 446
SsiI	CCGC	3 cut(s)	79, 293, 547
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	129, 262
TaaI	ACNGT	2 cut(s)	145, 626
TaiI	ACGT	2 cut(s)	138, 417
TaqI	TCGA	6 cut(s)	120, 327, 379, 468, 577, 642
TasI	AATT	2 cut(s)	17, 446
TfiI	GAWTC	4 cut(s)	102, 115, 297, 470
TseI	GCWGC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	653
XceI	RCATGY	1 cut(s)	497
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	1 cut(s)	126
ZraI	GACGTC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.