Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000787.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

55236 .. 56958

Gene Structure 1723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000787.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggtgcccagcagaggaagaaggaaaaggaaaagagagggccccacagcccacttgccatcagaaggcctactgccacgtcagcaaatagggacccattgccacatcagcaaacagggacccactgccacgtcagtaggtcaacgatcaacaacggtcaactattttcctgcgatttttcaggccattttccggcgacttcccggcacattccggatgagtaacctaaacaaattggactttgctccattgggaacaactggctctggacatcacaggtgggttcgtgatatccgccagcatctcaaggctataggaatcttggatatgattatcgagcctagccaggacgtgataactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagtcatcatcctaatgactcgtcatatggatgattcactccagcacacatttgtagagctcgtggtagagctcgtgaagaacttgtcaccgcctacaaagcatattgtgaagcaagagaagctcactatgtggaacaagaagatcaagaagatgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

192

Amino Acids

21.74

Weight (kDa)

10.55

Isoelectric Point (pI)

65.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	2 cut(s)	295, 509
AdeI	CACNNNGTG	1 cut(s)	549
AfiI	CCNNNNNNNGG	3 cut(s)	14, 65, 192
AjiI	CACGTC	3 cut(s)	80, 132, 352
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	5 cut(s)	371, 377, 478, 490, 541
AluI	AGCT	5 cut(s)	371, 377, 478, 490, 541
Alw21I	GWGCWC	2 cut(s)	480, 492
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	3 cut(s)	40, 67, 183
ApaI	GGGCCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	395
AspS9I	GGNCC	4 cut(s)	40, 41, 93, 119
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	498
AvaII	GGWCC	2 cut(s)	93, 119
BaeGI	GKGCMC	2 cut(s)	9, 44
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	3 cut(s)	44, 480, 492
BauI	CACGAG	2 cut(s)	479, 491
Bbv12I	GWGCWC	2 cut(s)	480, 492
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	204
BfaI	CTAG	2 cut(s)	342, 577
BfmI	CTRYAG	1 cut(s)	312
BglI	GCCNNNNNGGC	1 cut(s)	404
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	204, 347
Bme18I	GGWCC	2 cut(s)	93, 119
BmgBI	CACGTC	3 cut(s)	80, 132, 352
BmgT120I	GGNCC	4 cut(s)	40, 41, 93, 119
BmiI	GGNNCC	7 cut(s)	6, 42, 43, 94, 95, 120, 121
BmrFI	CCNGG	2 cut(s)	204, 347
BmsI	GCATC	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	443
BpuEI	CTTGAG	2 cut(s)	290, 357
BpuMI	CCSGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 65, 192
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	97
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	347
BseGI	GGATG	3 cut(s)	222, 426, 454
BseLI	CCNNNNNNNGG	3 cut(s)	14, 65, 192
BseMI	GCAATG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	265
BseSI	GKGCMC	2 cut(s)	9, 44
BseXI	GCAGC	1 cut(s)	407
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	3 cut(s)	42, 69, 185
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	480, 492
BsiSI	CCGG	3 cut(s)	193, 204, 214
BslFI	GGGAC	2 cut(s)	106, 132
BslI	CCNNNNNNNGG	3 cut(s)	14, 65, 192
BsmFI	GGGAC	2 cut(s)	106, 132
BsnI	GGCC	3 cut(s)	42, 69, 185
Bsp120I	GGGCCC	1 cut(s)	40
Bsp1286I	GDGCHC	4 cut(s)	9, 44, 480, 492
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	146, 561, 573
BspACI	CCGC	2 cut(s)	295, 509
BspANI	GGCC	3 cut(s)	42, 69, 185
BspEI	TCCGGA	1 cut(s)	213
BspLI	GGNNCC	7 cut(s)	6, 42, 43, 94, 95, 120, 121
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	265
BssMI	GATC	3 cut(s)	146, 561, 573
BssSI	CACGAG	2 cut(s)	479, 491
Bst2BI	CACGAG	2 cut(s)	479, 491
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	157, 361
BstC8I	GCNNGC	2 cut(s)	299, 369
BstDEI	CTNAG	1 cut(s)	400
BstF5I	GGATG	3 cut(s)	222, 426, 454
BstKTI	GATC	3 cut(s)	149, 564, 576
BstMBI	GATC	3 cut(s)	146, 561, 573
BstMWI	GCNNNNNNNGC	8 cut(s)	82, 108, 383, 392, 404, 413, 517, 538
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	202, 345
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	2 cut(s)	9, 44
BstV1I	GCAGC	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	42, 69, 185
BtrI	CACGTC	3 cut(s)	80, 132, 352
BtsCI	GGATG	3 cut(s)	222, 426, 454
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	299, 369
Cfr13I	GGNCC	4 cut(s)	40, 41, 93, 119
DdeI	CTNAG	1 cut(s)	400
DpnI	GATC	3 cut(s)	148, 563, 575
DpnII	GATC	3 cut(s)	146, 561, 573
DraIII	CACNNNGTG	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	284
Ecl136II	GAGCTC	2 cut(s)	478, 490
Eco147I	AGGCCT	1 cut(s)	69
Eco24I	GRGCYC	3 cut(s)	44, 480, 492
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	2 cut(s)	93, 119
Eco53kI	GAGCTC	2 cut(s)	478, 490
EcoICRI	GAGCTC	2 cut(s)	478, 490
EcoO109I	RGGNCCY	4 cut(s)	40, 41, 93, 119
EcoRII	CCWGG	1 cut(s)	345
EcoRV	GATATC	1 cut(s)	292
EcoT38I	GRGCYC	3 cut(s)	44, 480, 492
FaiI	YATR	6 cut(s)	314, 329, 444, 446, 522, 548
FaqI	GGGAC	2 cut(s)	106, 132
FauNDI	CATATG	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	3 cut(s)	229, 413, 461
FriOI	GRGCYC	3 cut(s)	44, 480, 492
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	342, 577
GluI	GCNGC	1 cut(s)	396
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	443
HaeIII	GGCC	3 cut(s)	42, 69, 185
HapII	CCGG	3 cut(s)	193, 204, 214
HincII	GTYRAC	2 cut(s)	143, 160
HindII	GTYRAC	2 cut(s)	143, 160
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	3 cut(s)	318, 436, 452
HpaII	CCGG	3 cut(s)	193, 204, 214
HphI	GGTGA	1 cut(s)	498
Hpy166II	GTNNAC	2 cut(s)	143, 160
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	5 cut(s)	214, 267, 287, 493, 565
Hpy8I	GTNNAC	2 cut(s)	143, 160
HpyAV	CCTTC	2 cut(s)	15, 59
HpyCH4III	ACNGT	2 cut(s)	157, 361
HpyCH4IV	ACGT	3 cut(s)	79, 131, 351
HpyF10VI	GCNNNNNNNGC	8 cut(s)	82, 108, 383, 392, 404, 413, 517, 538
HpyF3I	CTNAG	1 cut(s)	400
HpySE526I	ACGT	3 cut(s)	79, 131, 351
KflI	GGGWCCC	2 cut(s)	93, 119
Kpn2I	TCCGGA	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	146, 561, 573
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	342, 577
MaeII	ACGT	3 cut(s)	79, 131, 351
MaeIII	GTNAC	2 cut(s)	221, 504
MalI	GATC	3 cut(s)	148, 563, 575
MboI	GATC	3 cut(s)	146, 561, 573
MboII	GAAGA	3 cut(s)	30, 508, 571
MhlI	GDGCHC	4 cut(s)	9, 44, 480, 492
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	430
MnlI	CCTC	3 cut(s)	8, 31, 397
MroI	TCCGGA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	431, 447
MspI	CCGG	3 cut(s)	193, 204, 214
MspR9I	CCNGG	2 cut(s)	204, 347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	8 cut(s)	82, 108, 383, 392, 404, 413, 517, 538
NciI	CCSGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	444
NdeII	GATC	3 cut(s)	146, 561, 573
NlaIV	GGNNCC	7 cut(s)	6, 42, 43, 94, 95, 120, 121
NmuCI	GTSAC	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	318, 452
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PpuMI	RGGWCCY	2 cut(s)	93, 119
Psp124BI	GAGCTC	2 cut(s)	480, 492
Psp5II	RGGWCCY	2 cut(s)	93, 119
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	7 cut(s)	6, 42, 43, 94, 95, 120, 121
PspOMI	GGGCCC	1 cut(s)	40
PspPI	GGNCC	4 cut(s)	40, 41, 93, 119
PspPPI	RGGWCCY	2 cut(s)	93, 119
RseI	CAYNNNNRTG	2 cut(s)	431, 447
SacI	GAGCTC	2 cut(s)	480, 492
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	3 cut(s)	146, 561, 573
Sau96I	GGNCC	4 cut(s)	40, 41, 93, 119
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	2 cut(s)	204, 347
SduI	GDGCHC	4 cut(s)	9, 44, 480, 492
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	2 cut(s)	93, 119
SmiMI	CAYNNNNRTG	2 cut(s)	431, 447
SmlI	CTYRAG	2 cut(s)	305, 372
SmoI	CTYRAG	2 cut(s)	305, 372
Sse9I	AATT	1 cut(s)	233
SseBI	AGGCCT	1 cut(s)	69
SsiI	CCGC	2 cut(s)	295, 509
SspMI	CTAG	2 cut(s)	342, 577
SstI	GAGCTC	2 cut(s)	480, 492
StuI	AGGCCT	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	202, 345
TaaI	ACNGT	2 cut(s)	157, 361
TaiI	ACGT	3 cut(s)	82, 134, 354
TaqI	TCGA	1 cut(s)	336
TasI	AATT	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	318, 452
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	504
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	2 cut(s)	93, 119
XspI	CTAG	2 cut(s)	342, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.