Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8484175.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

382 .. 2318

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8484175.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1396 bp

atgtgttgtctcgtagcatgggatgctgaatttgcaactgaggcatatcggcagcaggttgaagccttgactcaacaccagttgatggaggaactggaatatgaagccaaggagaaggaagatgaagcagatgaaaatcttgattctctgaggtatgggatgccaagtgatcctaaacccaagcataagaagaaatcgaagaaagcaaaatttaaatctctgaagaaacgttctctagcttctgagctggaacctgttaaaggagagctgcaagtggaacctatgttcatagatgaagattatctctctaatgatgtgttttcctattcggatattgaatcacctcattcaagtgtgcagaaaaaacgcaagaaggctgaatctaaaccagctggtgaagataagatttcaaagaagaagtctaagaaactgaagaagtctcatcttgaaatcagtacttcagagtttgatactagtgtctcctcagtgcagcatgttgaagcttcagagttaaaaccatgcgagagtgtggttgaattcgagcataaaccaattagtagaaccaaaatgggagggaaaatatccatcactgccatgcctgtaaagcgagttctaatgataaaaccagagaagctaaagaaggcaaacatttggtctagagattgtattccatcaccggatttttggttatcacaggaggatgcaattttatgtgctgtggtacatgagtatggcccttattggagtttggtgagtgagacactttatggtatgactgctggtgggttttatagggggagatatcgccatccaattcattgttgtgagaggtttagggaacttatccaaagatatgttttctccgctccagacaatcctaattatgaaaaggtcaacaatataggatctggaaaagctcttttaagagtaacagaggaaaatattcgaatgttattaaatgttgctgccgagcagcccaatacagaatatttgattcagaaacacttcattgccctgctatcctctgtctggaagatggcatctcacaaagacgggagacaaaatctcccatcttctgggaatggtgtatattttggcagaaattttttcagttcttccaaccaaatttctcggacttcagtgaaggaaaacacagcaaccatgaaatttacccattttggacagggtgccaggttggtagcagctgcgcttaatgatgccagcagcaggcgaggggatgagtgtgtcatttctcccaaccctaggaaaaaatcatcaaccgatgctgaacagttggatataactctggagtttcaggcacaaaaggatgactccacagatccatttccatctgttatcaatttatcaatatctgatataggccctccatcagaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0016514 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0070603 GO:0071944 GO:0098542 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Helicase_C Myb_DNA-bind_6 SNF2_N

Protein Analysis

465

Amino Acids

52.59

Weight (kDa)

7.97

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	1187
AccB7I	CCANNNNNTGG	2 cut(s)	85, 1076
AccBSI	CCGCTC	1 cut(s)	866
AciI	CCGC	1 cut(s)	864
AclI	AACGTT	1 cut(s)	229
AclWI	GGATC	3 cut(s)	164, 913, 1334
AcsI	RAATTY	6 cut(s)	29, 209, 536, 1102, 1125, 1166
AcuI	CTGAAG	5 cut(s)	242, 444, 452, 489, 1122
AfaI	GTAC	2 cut(s)	457, 723
AfiI	CCNNNNNNNGG	6 cut(s)	85, 260, 1029, 1076, 1227, 1263
AgsI	TTSAA	7 cut(s)	62, 338, 351, 411, 449, 500, 536
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	1190
AloI	GAACNNNNNNTCC	2 cut(s)	269, 301
AluBI	AGCT	8 cut(s)	239, 247, 268, 392, 503, 634, 917, 1205
AluI	AGCT	8 cut(s)	239, 247, 268, 392, 503, 634, 917, 1205
Alw26I	GTCTC	5 cut(s)	14, 444, 484, 752, 1051
AlwI	GGATC	3 cut(s)	164, 913, 1334
AoxI	GGCC	2 cut(s)	733, 1381
ApeKI	GCWGC	8 cut(s)	52, 268, 490, 965, 973, 1202, 1205, 1224
ApoI	RAATTY	6 cut(s)	29, 209, 536, 1102, 1125, 1166
ArsI	GACNNNNNNTTYG	4 cut(s)	404, 436, 638, 670
Asp700I	GAANNNNTTC	2 cut(s)	942, 1004
AspA2I	CCTAGG	1 cut(s)	1262
AspLEI	GCGC	1 cut(s)	1210
AspS9I	GGNCC	2 cut(s)	734, 1382
AsuHPI	GGTGA	4 cut(s)	333, 407, 666, 763
AsuII	TTCGAA	1 cut(s)	946
AvrII	CCTAGG	1 cut(s)	1262
BaeI	ACNNNNGTAYC	4 cut(s)	462, 495, 713, 746
BanI	GGYRCC	1 cut(s)	1187
BbvI	GCAGC	8 cut(s)	64, 255, 502, 952, 985, 1192, 1214, 1236
BccI	CCATC	7 cut(s)	79, 593, 679, 816, 1030, 1078, 1357
BciT130I	CCWGG	1 cut(s)	1192
BcoDI	GTCTC	5 cut(s)	14, 444, 484, 752, 1051
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	4 cut(s)	236, 474, 657, 1263
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	8 cut(s)	53, 269, 491, 966, 974, 1203, 1206, 1225
BlnI	CCTAGG	1 cut(s)	1262
BlsI	GCNGC	8 cut(s)	54, 270, 492, 967, 975, 1204, 1207, 1226
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	1192
BmgT120I	GGNCC	2 cut(s)	734, 1382
BmiI	GGNNCC	3 cut(s)	252, 279, 1189
BmrFI	CCNGG	1 cut(s)	1192
BmsI	GCATC	6 cut(s)	13, 150, 691, 1049, 1207, 1273
BpmI	CTGGAG	2 cut(s)	852, 1328
Bpu14I	TTCGAA	1 cut(s)	946
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	108, 1262
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	1050, 1080
Bsc4I	CCNNNNNNNGG	6 cut(s)	85, 260, 1029, 1076, 1227, 1263
Bse1I	ACTGG	2 cut(s)	79, 99
Bse3DI	GCAATG	1 cut(s)	1008
Bse8I	GATNNNNATC	1 cut(s)	135
BseBI	CCWGG	1 cut(s)	1192
BseDI	CCNNGG	2 cut(s)	108, 1262
BseGI	GGATG	6 cut(s)	28, 165, 706, 808, 1243, 1333
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	6 cut(s)	85, 260, 1029, 1076, 1227, 1263
BseMI	GCAATG	1 cut(s)	1008
BseMII	CTCAG	4 cut(s)	30, 140, 234, 498
BseNI	ACTGG	2 cut(s)	79, 99
BseRI	GAGGAG	1 cut(s)	472
BseXI	GCAGC	8 cut(s)	64, 255, 502, 952, 985, 1192, 1214, 1236
BsgI	GTGCAG	2 cut(s)	377, 509
BshFI	GGCC	2 cut(s)	735, 1383
BshNI	GGYRCC	1 cut(s)	1187
BsiSI	CCGG	1 cut(s)	677
BslI	CCNNNNNNNGG	6 cut(s)	85, 260, 1029, 1076, 1227, 1263
BsmAI	GTCTC	5 cut(s)	14, 444, 484, 752, 1051
BsnI	GGCC	2 cut(s)	735, 1383
Bsp119I	TTCGAA	1 cut(s)	946
Bsp143I	GATC	3 cut(s)	169, 905, 1339
BspACI	CCGC	1 cut(s)	864
BspANI	GGCC	2 cut(s)	735, 1383
BspCNI	CTCAG	4 cut(s)	31, 141, 235, 497
BspLI	GGNNCC	3 cut(s)	252, 279, 1189
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	3 cut(s)	164, 913, 1334
BspT104I	TTCGAA	1 cut(s)	946
BspT107I	GGYRCC	1 cut(s)	1187
BsrBI	CCGCTC	1 cut(s)	866
BsrDI	GCAATG	1 cut(s)	1008
BsrI	ACTGG	2 cut(s)	79, 99
BssECI	CCNNGG	2 cut(s)	108, 1262
BssMI	GATC	3 cut(s)	169, 905, 1339
BssT1I	CCWWGG	2 cut(s)	108, 1262
Bst2UI	CCWGG	1 cut(s)	1192
Bst4CI	ACNGT	1 cut(s)	1293
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	946
BstC8I	GCNNGC	2 cut(s)	1222, 1229
BstDEI	CTNAG	5 cut(s)	39, 149, 243, 423, 484
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	6 cut(s)	28, 165, 706, 808, 1243, 1333
BstHHI	GCGC	1 cut(s)	1210
BstKTI	GATC	3 cut(s)	172, 908, 1342
BstMAI	GTCTC	5 cut(s)	14, 444, 484, 752, 1051
BstMBI	GATC	3 cut(s)	169, 905, 1339
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 32, 41, 604
BstNI	CCWGG	1 cut(s)	1192
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	1190
BstV1I	GCAGC	8 cut(s)	64, 255, 502, 952, 985, 1192, 1214, 1236
BstX2I	RGATCY	2 cut(s)	905, 1339
BstYI	RGATCY	2 cut(s)	905, 1339
BsuRI	GGCC	2 cut(s)	735, 1383
BtsCI	GGATG	6 cut(s)	28, 165, 706, 808, 1243, 1333
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	492, 588, 1146
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	1222, 1229
CfoI	GCGC	1 cut(s)	1210
Cfr13I	GGNCC	2 cut(s)	734, 1382
Csp6I	GTAC	2 cut(s)	456, 722
CviAII	CATG	6 cut(s)	18, 494, 519, 595, 725, 1162
CviQI	GTAC	2 cut(s)	456, 722
DdeI	CTNAG	5 cut(s)	39, 149, 243, 423, 484
DpnI	GATC	3 cut(s)	171, 907, 1341
DpnII	GATC	3 cut(s)	169, 905, 1339
DraI	TTTAAA	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	108, 1262
Eco32I	GATATC	1 cut(s)	803
Eco57I	CTGAAG	5 cut(s)	242, 444, 452, 489, 1122
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	1382
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	1190
EcoRV	GATATC	1 cut(s)	803
EcoT14I	CCWWGG	2 cut(s)	108, 1262
ErhI	CCWWGG	2 cut(s)	108, 1262
FaeI	CATG	6 cut(s)	21, 497, 522, 598, 728, 1165
FatI	CATG	6 cut(s)	17, 493, 518, 594, 724, 1161
Fnu4HI	GCNGC	8 cut(s)	53, 269, 491, 966, 974, 1203, 1206, 1225
FokI	GGATG	6 cut(s)	35, 172, 713, 795, 1250, 1340
Fsp4HI	GCNGC	8 cut(s)	53, 269, 491, 966, 974, 1203, 1206, 1225
FspBI	CTAG	4 cut(s)	236, 474, 657, 1263
GlaI	GCGC	1 cut(s)	1209
GluI	GCNGC	8 cut(s)	53, 269, 491, 966, 974, 1203, 1206, 1225
GsuI	CTGGAG	2 cut(s)	852, 1328
HaeIII	GGCC	2 cut(s)	735, 1383
HapII	CCGG	1 cut(s)	677
HhaI	GCGC	1 cut(s)	1210
Hin1II	CATG	6 cut(s)	21, 497, 522, 598, 728, 1165
Hin6I	GCGC	1 cut(s)	1208
HinP1I	GCGC	1 cut(s)	1208
HincII	GTYRAC	1 cut(s)	895
HindII	GTYRAC	1 cut(s)	895
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	6 cut(s)	70, 143, 338, 380, 994, 1331
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	4 cut(s)	333, 407, 666, 763
Hpy166II	GTNNAC	1 cut(s)	895
Hpy188III	TCNNGA	7 cut(s)	140, 446, 657, 869, 909, 1030, 1307
Hpy8I	GTNNAC	1 cut(s)	895
HpyAV	CCTTC	4 cut(s)	109, 367, 634, 1138
HpyCH4III	ACNGT	1 cut(s)	1293
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	5 cut(s)	35, 271, 358, 490, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 32, 41, 604
HpyF3I	CTNAG	5 cut(s)	39, 149, 243, 423, 484
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	6 cut(s)	21, 497, 522, 598, 728, 1165
HspAI	GCGC	1 cut(s)	1208
Kzo9I	GATC	3 cut(s)	169, 905, 1339
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	8 cut(s)	64, 255, 502, 952, 985, 1192, 1214, 1236
LweI	GCATC	6 cut(s)	13, 150, 691, 1049, 1207, 1273
MaeI	CTAG	4 cut(s)	236, 474, 657, 1263
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	928
MalI	GATC	3 cut(s)	171, 907, 1341
MbiI	CCGCTC	1 cut(s)	866
MboI	GATC	3 cut(s)	169, 905, 1339
MflI	RGATCY	2 cut(s)	905, 1339
MlyI	GAGTC	2 cut(s)	64, 1325
MmeI	TCCRAC	2 cut(s)	1143, 1275
MroXI	GAANNNNTTC	2 cut(s)	942, 1004
MseI	TTAA	6 cut(s)	213, 258, 512, 923, 956, 1212
MslI	CAYNNNNRTG	4 cut(s)	351, 593, 729, 822
MspA1I	CMGCKG	2 cut(s)	392, 1205
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	1 cut(s)	1192
MvaI	CCWGG	1 cut(s)	1192
MwoI	GCNNNNNNNGC	4 cut(s)	23, 32, 41, 604
NdeII	GATC	3 cut(s)	169, 905, 1339
NlaIII	CATG	6 cut(s)	21, 497, 522, 598, 728, 1165
NlaIV	GGNNCC	3 cut(s)	252, 279, 1189
NmeAIII	GCCGAG	1 cut(s)	994
NspI	RCATGY	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	946
PdmI	GAANNNNTTC	2 cut(s)	942, 1004
PfeI	GAWTC	4 cut(s)	143, 338, 380, 994
PflMI	CCANNNNNTGG	2 cut(s)	85, 1076
PkrI	GCNGC	8 cut(s)	54, 270, 492, 967, 975, 1204, 1207, 1226
PleI	GAGTC	2 cut(s)	64, 1325
PpsI	GAGTC	2 cut(s)	64, 1325
Psp1406I	AACGTT	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	1190
PspGI	CCWGG	1 cut(s)	1190
PspN4I	GGNNCC	3 cut(s)	252, 279, 1189
PspPI	GGNCC	2 cut(s)	734, 1382
PsrI	GAACNNNNNNTAC	2 cut(s)	594, 626
PsuI	RGATCY	2 cut(s)	905, 1339
PvuII	CAGCTG	2 cut(s)	392, 1205
RsaI	GTAC	2 cut(s)	457, 723
RsaNI	GTAC	2 cut(s)	456, 722
RseI	CAYNNNNRTG	4 cut(s)	351, 593, 729, 822
SaqAI	TTAA	6 cut(s)	213, 258, 512, 923, 956, 1212
SatI	GCNGC	8 cut(s)	53, 269, 491, 966, 974, 1203, 1206, 1225
Sau3AI	GATC	3 cut(s)	169, 905, 1339
Sau96I	GGNCC	2 cut(s)	734, 1382
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	2 cut(s)	64, 1325
ScrFI	CCNGG	1 cut(s)	1192
SfaNI	GCATC	6 cut(s)	13, 150, 691, 1049, 1207, 1273
SfuI	TTCGAA	1 cut(s)	946
SmiI	ATTTAAAT	1 cut(s)	214
SmiMI	CAYNNNNRTG	4 cut(s)	351, 593, 729, 822
SpeI	ACTAGT	1 cut(s)	473
SsiI	CCGC	1 cut(s)	864
SspI	AATATT	2 cut(s)	943, 989
SspMI	CTAG	4 cut(s)	236, 474, 657, 1263
StyD4I	CCNGG	1 cut(s)	1190
StyI	CCWWGG	2 cut(s)	108, 1262
SwaI	ATTTAAAT	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	1293
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	197, 540, 946
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	4 cut(s)	143, 338, 380, 994
Tru1I	TTAA	6 cut(s)	213, 258, 512, 923, 956, 1212
Tru9I	TTAA	6 cut(s)	213, 258, 512, 923, 956, 1212
TscAI	CASTG	3 cut(s)	492, 595, 1146
TseI	GCWGC	8 cut(s)	52, 268, 490, 965, 973, 1202, 1205, 1224
TspDTI	ATGAA	9 cut(s)	117, 138, 147, 277, 309, 806, 900, 997, 1178
TspRI	CASTG	3 cut(s)	492, 595, 1146
Van91I	CCANNNNNTGG	2 cut(s)	85, 1076
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	6 cut(s)	29, 209, 536, 1102, 1125, 1166
XbaI	TCTAGA	1 cut(s)	656
XceI	RCATGY	1 cut(s)	497
XmaJI	CCTAGG	1 cut(s)	1262
XmnI	GAANNNNTTC	2 cut(s)	942, 1004
XspI	CTAG	4 cut(s)	236, 474, 657, 1263
ZrmI	AGTACT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.