Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8326129.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 622

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8326129.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 622 bp

acagcaacagcaacagaagcaagctaatcagactcagccatatgttcagagagtccagcagaatcgtcaagtgaattcggagcttccaagcaagcctccaaatgatttagcttcagccgaagagcagcctgtgaatagtacttctctgatcggttcaagcatggcaattcctcagtcctctattgattcgtctaatgtagtaccggtttcttctggcattactcaatggaaatcatcagaagcagtatatgattctaatctgccaaattcaacagctcaagagggttcacttgggagcccatcaccaacaaattcatctgggaatgagccagtgcccccttttagtcaaggtttaggcccaaggcagttatctggtaactttgcctctcatggacatattgctggtgcgcaatggcagcagaagcagctactgcaaaagcctccttcgctaccacccctgtcccaacaactctacgagcaacaagagcaacagcagcagcaggaacaagaatcaccccaacatcaactgcctttgccacagcagtctcagcaacaaatgcagcatctgccagcagggcaaggtggtttgtatatgatgcctagtaattcaaaatcagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0097346 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Myb_DNA-bind_6

Protein Analysis

206

Amino Acids

22.41

Weight (kDa)

5.31

Isoelectric Point (pI)

89.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	409
AcsI	RAATTY	3 cut(s)	74, 266, 311
AcuI	CTGAAG	1 cut(s)	97
AfaI	GTAC	2 cut(s)	140, 202
AgeI	ACCGGT	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	157, 271, 610
AluBI	AGCT	5 cut(s)	24, 83, 111, 276, 428
AluI	AGCT	5 cut(s)	24, 83, 111, 276, 428
Alw26I	GTCTC	1 cut(s)	550
AlwNI	CAGNNNCTG	2 cut(s)	431, 566
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	6 cut(s)	125, 416, 425, 494, 497, 560
ApoI	RAATTY	3 cut(s)	74, 266, 311
AsiGI	ACCGGT	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	295, 505
BaeGI	GKGCMC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	300
BbvI	GCAGC	6 cut(s)	137, 428, 437, 506, 509, 572
BccI	CCATC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	550
BfaI	CTAG	1 cut(s)	601
BglI	GCCNNNNNGGC	1 cut(s)	575
BisI	GCNGC	6 cut(s)	126, 417, 426, 495, 498, 561
BlsI	GCNGC	6 cut(s)	127, 418, 427, 496, 499, 562
BmcAI	AGTACT	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	297
BmsI	GCATC	2 cut(s)	572, 586
BpuEI	CTTGAG	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	417
Bse8I	GATNNNNATC	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	360
BseJI	GATNNNNATC	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	3 cut(s)	48, 186, 561
BseNI	ACTGG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	6 cut(s)	137, 428, 437, 506, 509, 572
BshFI	GGCC	1 cut(s)	358
BshTI	ACCGGT	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	300, 337
Bsp143I	GATC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	3 cut(s)	47, 185, 560
BspLI	GGNNCC	1 cut(s)	297
BspQI	GCTCTTC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	360
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	115
BstAPI	GCANNNNNTGC	3 cut(s)	431, 557, 566
BstC8I	GCNNGC	3 cut(s)	22, 93, 571
BstDEI	CTNAG	3 cut(s)	34, 172, 547
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	6 cut(s)	137, 428, 437, 506, 509, 572
BsuRI	GGCC	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	3 cut(s)	22, 93, 571
CaiI	CAGNNNCTG	2 cut(s)	431, 566
CfoI	GCGC	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	139, 201
CspAI	ACCGGT	1 cut(s)	203
CviAII	CATG	2 cut(s)	161, 390
CviQI	GTAC	2 cut(s)	139, 201
DdeI	CTNAG	3 cut(s)	34, 172, 547
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	2 cut(s)	164, 393
FaiI	YATR	9 cut(s)	41, 43, 162, 248, 250, 391, 397, 592, 594
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	2 cut(s)	160, 389
FauNDI	CATATG	1 cut(s)	41
Fnu4HI	GCNGC	6 cut(s)	126, 417, 426, 495, 498, 561
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	6 cut(s)	126, 417, 426, 495, 498, 561
FspBI	CTAG	1 cut(s)	601
FspI	TGCGCA	1 cut(s)	409
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	6 cut(s)	126, 417, 426, 495, 498, 561
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	2 cut(s)	164, 393
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HinfI	GANTC	6 cut(s)	32, 52, 62, 186, 252, 510
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	2 cut(s)	295, 505
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	6 cut(s)	31, 49, 80, 148, 239, 617
Hpy188III	TCNNGA	1 cut(s)	279
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	1 cut(s)	454
HpyCH4V	TGCA	2 cut(s)	434, 560
HpyF3I	CTNAG	3 cut(s)	34, 172, 547
Hsp92II	CATG	2 cut(s)	164, 393
HspAI	GCGC	1 cut(s)	408
Kzo9I	GATC	1 cut(s)	148
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	80, 295
Lsp1109I	GCAGC	6 cut(s)	137, 428, 437, 506, 509, 572
LweI	GCATC	2 cut(s)	572, 586
MaeI	CTAG	1 cut(s)	601
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	132, 202
MhlI	GDGCHC	2 cut(s)	300, 337
MluCI	AATT	5 cut(s)	74, 166, 266, 311, 605
MlyI	GAGTC	2 cut(s)	26, 61
MnlI	CCTC	6 cut(s)	106, 181, 188, 275, 395, 451
MspI	CCGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	41
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	164, 393
NlaIV	GGNNCC	1 cut(s)	297
NsbI	TGCGCA	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	115
PfeI	GAWTC	4 cut(s)	62, 186, 252, 510
PinAI	ACCGGT	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	127, 418, 427, 496, 499, 562
PleI	GAGTC	2 cut(s)	26, 60
PpsI	GAGTC	2 cut(s)	26, 60
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	357
PstNI	CAGNNNCTG	2 cut(s)	431, 566
RsaI	GTAC	2 cut(s)	140, 202
RsaNI	GTAC	2 cut(s)	139, 201
SapI	GCTCTTC	1 cut(s)	115
SatI	GCNGC	6 cut(s)	126, 417, 426, 495, 498, 561
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	357
ScaI	AGTACT	1 cut(s)	140
SchI	GAGTC	2 cut(s)	26, 61
SduI	GDGCHC	2 cut(s)	300, 337
SetI	ASST	7 cut(s)	26, 85, 113, 278, 353, 430, 584
SfaNI	GCATC	2 cut(s)	572, 586
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	5 cut(s)	74, 166, 266, 311, 605
SspMI	CTAG	1 cut(s)	601
StyI	CCWWGG	1 cut(s)	360
TasI	AATT	5 cut(s)	74, 166, 266, 311, 605
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	4 cut(s)	62, 186, 252, 510
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	6 cut(s)	125, 416, 425, 494, 497, 560
TspDTI	ATGAA	1 cut(s)	304
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	3 cut(s)	74, 266, 311
XspI	CTAG	1 cut(s)	601
ZrmI	AGTACT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.