Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8234847.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

79 .. 411

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8234847.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgacagtcccaaacgacgccgcttccaaactcgacagccaccgcgccgagccggacgcgtcatcgtcactcgccgatgacggcggtgaggtcgccgctgggaaagtgaggggatcgtggtcgcccaaagaggatgagatgctgactcggctggtcacccagtttggcgccagaaactggagcgtcatcgccagaggaattcccggccggtccggcaagtcttgccggctccggtggtgcaatcagcttaaccctggtgtaaagcgcaaacctttctccggtaaaccgccatttgctgttgaattttctgtggatttcgggttttttaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

110

Amino Acids

11.97

Weight (kDa)

9.62

Isoelectric Point (pI)

30.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	177
AccII	CGCG	2 cut(s)	45, 59
AciI	CCGC	5 cut(s)	21, 43, 84, 96, 287
AclWI	GGATC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	198, 302
AcyI	GRCGYC	2 cut(s)	18, 168
AfiI	CCNNNNNNNGG	2 cut(s)	177, 278
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
AlwI	GGATC	1 cut(s)	121
AlwNI	CAGNNNCTG	1 cut(s)	177
AoxI	GGCC	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	198, 302
AspLEI	GCGC	3 cut(s)	47, 170, 267
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	204
AsuHPI	GGTGA	2 cut(s)	98, 148
AvaII	GGWCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	171
BglI	GCCNNNNNGGC	1 cut(s)	213
BisI	GCNGC	2 cut(s)	21, 96
BlsI	GCNGC	2 cut(s)	22, 97
Bme1390I	CCNGG	2 cut(s)	204, 255
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	169, 230
BmrFI	CCNGG	2 cut(s)	204, 255
BmrI	ACTGGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	204
BsaHI	GRCGYC	2 cut(s)	18, 168
BsaJI	CCNNGG	1 cut(s)	253
BsaWI	WCCGGW	2 cut(s)	231, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 278
Bse118I	RCCGGY	2 cut(s)	207, 225
Bse1I	ACTGG	2 cut(s)	160, 182
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	177, 278
BseNI	ACTGG	2 cut(s)	160, 182
BseX3I	CGGCCG	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	98
Bsh1236I	CGCG	2 cut(s)	45, 59
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	208
BsiSI	CCGG	7 cut(s)	53, 204, 208, 213, 226, 232, 279
BslI	CCNNNNNNNGG	2 cut(s)	177, 278
BsnI	GGCC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	113
BspACI	CCGC	5 cut(s)	21, 43, 84, 96, 287
BspANI	GGCC	1 cut(s)	207
BspFNI	CGCG	2 cut(s)	45, 59
BspLI	GGNNCC	2 cut(s)	169, 230
BspPI	GGATC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	167
BsrFI	RCCGGY	2 cut(s)	207, 225
BsrI	ACTGG	2 cut(s)	160, 182
BssAI	RCCGGY	2 cut(s)	207, 225
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	113
BssNI	GRCGYC	2 cut(s)	18, 168
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	7
BstACI	GRCGYC	2 cut(s)	18, 168
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	227
BstEII	GGTNACC	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	2 cut(s)	45, 59
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	3 cut(s)	47, 170, 267
BstKTI	GATC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	113
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 213, 222
BstNI	CCWGG	1 cut(s)	255
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	202, 253
BstUI	CGCG	2 cut(s)	45, 59
BstZI	CGGCCG	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	227
CaiI	CAGNNNCTG	1 cut(s)	177
CfoI	GCGC	3 cut(s)	47, 170, 267
Cfr10I	RCCGGY	2 cut(s)	207, 225
Cfr13I	GGNCC	1 cut(s)	210
CpoI	CGGWCCG	1 cut(s)	210
CseI	GACGC	4 cut(s)	26, 48, 65, 172
CspI	CGGWCCG	1 cut(s)	210
CviJI	RGCY	6 cut(s)	39, 52, 151, 207, 229, 247
CviKI_1	RGCY	6 cut(s)	39, 52, 151, 207, 229, 247
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	1 cut(s)	115
DpnII	GATC	1 cut(s)	113
DraI	TTTAAA	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	205
EagI	CGGCCG	1 cut(s)	205
EclXI	CGGCCG	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	205
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	253
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	21, 96
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	21, 96
GlaI	GCGC	3 cut(s)	46, 169, 266
GluI	GCNGC	2 cut(s)	21, 96
GsaI	CCCAGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	199
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	7 cut(s)	53, 204, 208, 213, 226, 232, 279
HgaI	GACGC	4 cut(s)	26, 48, 65, 172
HhaI	GCGC	3 cut(s)	47, 170, 267
Hin1I	GRCGYC	2 cut(s)	18, 168
Hin6I	GCGC	3 cut(s)	45, 168, 265
HinP1I	GCGC	3 cut(s)	45, 168, 265
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	7 cut(s)	53, 204, 208, 213, 226, 232, 279
HphI	GGTGA	2 cut(s)	98, 148
Hpy166II	GTNNAC	1 cut(s)	284
Hpy8I	GTNNAC	1 cut(s)	284
Hpy99I	CGWCG	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 213, 222
Hsp92I	GRCGYC	2 cut(s)	18, 168
HspAI	GCGC	3 cut(s)	45, 168, 265
KasI	GGCGCC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	225
KroNI	GCCGGC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	113
LmnI	GCTCC	2 cut(s)	180, 234
LweI	GCATC	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	66, 154
MalI	GATC	1 cut(s)	115
MboI	GATC	1 cut(s)	113
MluCI	AATT	2 cut(s)	198, 302
MluI	ACGCGT	1 cut(s)	57
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	82, 102, 124, 188
MroNI	GCCGGC	1 cut(s)	225
MseI	TTAA	2 cut(s)	249, 327
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	7 cut(s)	53, 204, 208, 213, 226, 232, 279
MspR9I	CCNGG	2 cut(s)	204, 255
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	2 cut(s)	45, 59
MwoI	GCNNNNNNNGC	3 cut(s)	148, 213, 222
NaeI	GCCGGC	1 cut(s)	227
NarI	GGCGCC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	204
NdeII	GATC	1 cut(s)	113
NgoMIV	GCCGGC	1 cut(s)	225
NlaIV	GGNNCC	2 cut(s)	169, 230
NmeAIII	GCCGAG	2 cut(s)	73, 127
NmuCI	GTSAC	2 cut(s)	66, 154
PdiI	GCCGGC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	22, 97
PleI	GAGTC	1 cut(s)	139
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	253
PspEI	GGTNACC	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	169, 230
PspPI	GGNCC	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	177
Rsr2I	CGGWCCG	1 cut(s)	210
RsrII	CGGWCCG	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	249, 327
SatI	GCNGC	2 cut(s)	21, 96
Sau3AI	GATC	1 cut(s)	113
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	204, 255
SetI	ASST	3 cut(s)	93, 249, 274
SfaNI	GCATC	1 cut(s)	129
SfoI	GGCGCC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	2 cut(s)	198, 302
SsiI	CCGC	5 cut(s)	21, 43, 84, 96, 287
SspDI	GGCGCC	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	202, 253
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	198, 302
TauI	GCSGC	2 cut(s)	23, 98
Tru1I	TTAA	2 cut(s)	249, 327
Tru9I	TTAA	2 cut(s)	249, 327
TseFI	GTSAC	2 cut(s)	66, 154
Tsp45I	GTSAC	2 cut(s)	66, 154
Van91I	CCANNNNNTGG	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	2 cut(s)	198, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.