Rmu_co8223224.1_g000001
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8223224.1
N/A
Physical Location & Seq
Forward (+)
1 .. 390
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8223224.1_g000001.1.cds

Sequence Viewer

Length: 305 bp
gatccaatgtgaaacctgaaccagctgaccacgcttggacacctgagaaacaaaaagaagcttcacctccattggattatactcgtcctgatgcgttacttggttcagattggcttgagccaagtactgggtttaaaggccaatcaatcatgaatgatgcgattgcatcacttctcggtgaggatttggccactgactacaagcacatggcttctggaacgtctacatcaaatcaagggtggggtcttggttcttgcccgtggaacaacatgcctgccgtctgtcaaatgacggatcttccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006996 GO:0007033 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0008150 GO:0008285 GO:0009555 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009739 GO:0009740 GO:0009751 GO:0009755 GO:0009787 GO:0009789 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033993 GO:0040008 GO:0042127 GO:0042221 GO:0042493 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044703 GO:0045893 GO:0045926 GO:0045935 GO:0046677 GO:0048229 GO:0048232 GO:0048235 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048466 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048653 GO:0048654 GO:0048655 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905957 GO:1905959 GO:1990019 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

100

Amino Acids

10.78

Weight (kDa)

4.43

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 127
AccI GTMKAC 1 cut(s) 223
AclWI GGATC 1 cut(s) 302
AcoI YGGCCR 1 cut(s) 188
AfaI GTAC 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 127
AluBI AGCT 2 cut(s) 25, 61
AluI AGCT 2 cut(s) 25, 61
AlwI GGATC 1 cut(s) 302
AoxI GGCC 2 cut(s) 138, 188
AsuHPI GGTGA 2 cut(s) 56, 190
BalI TGGCCA 1 cut(s) 190
BceAI ACGGC 1 cut(s) 262
BmcAI AGTACT 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 3 cut(s) 81, 147, 175
BmuI ACTGGG 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 132
BshFI GGCC 2 cut(s) 140, 190
BslI CCNNNNNNNGG 1 cut(s) 127
BsnI GGCC 2 cut(s) 140, 190
Bsp143I GATC 1 cut(s) 294
BspANI GGCC 2 cut(s) 140, 190
BspCNI CTCAG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 149
BspPI GGATC 1 cut(s) 302
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 259
BstKTI GATC 2 cut(s) 4, 297
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 2 cut(s) 140, 190
BtgI CCRYGG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 275
CciI TCATGA 1 cut(s) 149
Csp6I GTAC 1 cut(s) 125
CviAII CATG 3 cut(s) 150, 207, 270
CviJI RGCY 7 cut(s) 25, 61, 114, 120, 140, 190, 211
CviKI_1 RGCY 7 cut(s) 25, 61, 114, 120, 140, 190, 211
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 3, 296
DpnII GATC 1 cut(s) 294
DraI TTTAAA 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 188
FaeI CATG 3 cut(s) 153, 210, 273
FaiI YATR 4 cut(s) 80, 151, 208, 271
FatI CATG 3 cut(s) 149, 206, 269
FblI GTMKAC 1 cut(s) 223
HaeIII GGCC 2 cut(s) 140, 190
Hin1II CATG 3 cut(s) 153, 210, 273
HindIII AAGCTT 1 cut(s) 59
HphI GGTGA 2 cut(s) 56, 190
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 88, 150, 215
Hpy8I GTNNAC 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 3 cut(s) 153, 210, 273
Kzo9I GATC 1 cut(s) 294
LpnPI CCDG 7 cut(s) 29, 35, 56, 101, 113, 200, 287
LweI GCATC 3 cut(s) 81, 147, 175
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 3, 296
MboI GATC 1 cut(s) 294
MboII GAAGA 1 cut(s) 289
MflI RGATCY 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 190
MluNI TGGCCA 1 cut(s) 190
MnlI CCTC 2 cut(s) 77, 174
Mox20I TGGCCA 1 cut(s) 190
MscI TGGCCA 1 cut(s) 190
MseI TTAA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 1 cut(s) 294
NlaIII CATG 3 cut(s) 153, 210, 273
NspI RCATGY 1 cut(s) 273
PagI TCATGA 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 294
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 134
Sau3AI GATC 1 cut(s) 294
ScaI AGTACT 1 cut(s) 126
SetI ASST 6 cut(s) 18, 27, 45, 63, 69, 223
SfaNI GCATC 3 cut(s) 81, 147, 175
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
TaiI ACGT 1 cut(s) 223
TatI WGTACW 1 cut(s) 124
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 198
Van91I CCANNNNNTGG 1 cut(s) 127
XceI RCATGY 1 cut(s) 273
XmiI GTMKAC 1 cut(s) 223
ZrmI AGTACT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.