Rmu_co8205462.1_g000001
MYB Family

SWI SNF complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8205462.1
N/A
Physical Location & Seq
Forward (+)
227 .. 703
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8205462.1_g000001.1.cds

Sequence Viewer

Length: 477 bp
atggaagaaaaacgcggagacgccggaactcagcctccggctaatgccgccgactctccggccgccgagcctacttcttcgagacgccgcgccggaggccaaaagcgaaaggccagcagcctcggcggctccggctcttcatcaacaccgtcgaaacgcttgactcgcgagaaggcttcgctttctcaccctccgatccacaacggcccgttgacgagggcccgccaggggcccaataaccatgcgtcggcctcagccgcggccgtgaagccagctgctcagacgaagcggccggagcagtcgtcggtggaggcggagcgggctaaaagggagagcgagttggaggctttggaggcttctatggaagctgagtttgaagccattagatctcgcgatgccaatgctcatgtggttcccagtcattgtggtgagagagactatttccaaacccttgtttctgttcaaattttttgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Myb_DNA-binding SWIRM SWIRM-assoc_1 ZZ

Protein Analysis

158

Amino Acids

16.79

Weight (kDa)

9.34

Isoelectric Point (pI)

65.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 319
AccII CGCG 5 cut(s) 15, 90, 168, 260, 393
AclWI GGATC 1 cut(s) 190
AcoI YGGCCR 3 cut(s) 60, 261, 290
AcsI RAATTY 1 cut(s) 465
AcyI GRCGYC 2 cut(s) 21, 85
AfiI CCNNNNNNNGG 2 cut(s) 228, 247
AgsI TTSAA 2 cut(s) 377, 464
AjnI CCWGG 1 cut(s) 225
AloI GAACNNNNNNTCC 2 cut(s) 19, 51
AluBI AGCT 2 cut(s) 275, 368
AluI AGCT 2 cut(s) 275, 368
Alw26I GTCTC 3 cut(s) 12, 76, 429
AlwI GGATC 1 cut(s) 190
AoxI GGCC 9 cut(s) 60, 97, 111, 205, 219, 230, 249, 261, 290
ApaI GGGCCC 2 cut(s) 223, 234
ApeKI GCWGC 2 cut(s) 117, 275
ApoI RAATTY 1 cut(s) 465
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 5 cut(s) 206, 219, 220, 230, 231
AsuHPI GGTGA 2 cut(s) 179, 440
BaeGI GKGCMC 2 cut(s) 223, 234
BanII GRGCYC 2 cut(s) 223, 234
BbvCI CCTCAGC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 129, 262
BceAI ACGGC 2 cut(s) 220, 248
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 3 cut(s) 12, 76, 429
BglI GCCNNNNNGGC 1 cut(s) 126
BglII AGATCT 1 cut(s) 386
BisI GCNGC 9 cut(s) 48, 63, 88, 118, 127, 258, 261, 276, 290
BlsI GCNGC 9 cut(s) 49, 64, 89, 119, 128, 259, 262, 277, 291
Bme1390I CCNGG 1 cut(s) 227
BmgT120I GGNCC 5 cut(s) 206, 219, 220, 230, 231
BmiI GGNNCC 5 cut(s) 130, 221, 231, 232, 414
BmrFI CCNGG 1 cut(s) 227
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 253
BsaHI GRCGYC 2 cut(s) 21, 85
BsaJI CCNNGG 3 cut(s) 121, 226, 258
BsaXI ACNNNNNCTCC 6 cut(s) 19, 49, 287, 317, 323, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 247
Bse1I ACTGG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 3 cut(s) 121, 226, 258
BseLI CCNNNNNNNGG 2 cut(s) 228, 247
BseMII CTCAG 4 cut(s) 44, 267, 293, 360
BseNI ACTGG 1 cut(s) 417
BseSI GKGCMC 2 cut(s) 223, 234
BseX3I CGGCCG 3 cut(s) 60, 261, 290
BseXI GCAGC 2 cut(s) 129, 262
Bsh1236I CGCG 5 cut(s) 15, 90, 168, 260, 393
Bsh1285I CGRYCG 3 cut(s) 63, 264, 293
BshFI GGCC 9 cut(s) 62, 99, 113, 207, 221, 232, 251, 263, 292
BsiEI CGRYCG 3 cut(s) 63, 264, 293
BsiSI CCGG 6 cut(s) 24, 38, 59, 93, 132, 293
BslI CCNNNNNNNGG 2 cut(s) 228, 247
BsmAI GTCTC 3 cut(s) 12, 76, 429
BsmBI CGTCTC 2 cut(s) 12, 76
BsnI GGCC 9 cut(s) 62, 99, 113, 207, 221, 232, 251, 263, 292
Bsp120I GGGCCC 2 cut(s) 219, 230
Bsp1286I GDGCHC 2 cut(s) 223, 234
Bsp143I GATC 2 cut(s) 195, 386
Bsp68I TCGCGA 2 cut(s) 168, 393
BspANI GGCC 9 cut(s) 62, 99, 113, 207, 221, 232, 251, 263, 292
BspCNI CTCAG 4 cut(s) 43, 266, 292, 361
BspFNI CGCG 5 cut(s) 15, 90, 168, 260, 393
BspLI GGNNCC 5 cut(s) 130, 221, 231, 232, 414
BspPI GGATC 1 cut(s) 190
BspQI GCTCTTC 1 cut(s) 142
BsrBI CCGCTC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 417
BssECI CCNNGG 3 cut(s) 121, 226, 258
BssMI GATC 2 cut(s) 195, 386
BssNI GRCGYC 2 cut(s) 21, 85
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 142
BstACI GRCGYC 2 cut(s) 21, 85
BstC8I GCNNGC 4 cut(s) 115, 223, 273, 321
BstDEI CTNAG 4 cut(s) 30, 253, 279, 369
BstDSI CCRYGG 1 cut(s) 258
BstFNI CGCG 5 cut(s) 15, 90, 168, 260, 393
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 198, 389
BstMAI GTCTC 3 cut(s) 12, 76, 429
BstMBI GATC 2 cut(s) 195, 386
BstMCI CGRYCG 3 cut(s) 63, 264, 293
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstSLI GKGCMC 2 cut(s) 223, 234
BstUI CGCG 5 cut(s) 15, 90, 168, 260, 393
BstV1I GCAGC 2 cut(s) 129, 262
BstX2I RGATCY 1 cut(s) 386
BstYI RGATCY 1 cut(s) 386
BstZI CGGCCG 3 cut(s) 60, 261, 290
BsuRI GGCC 9 cut(s) 62, 99, 113, 207, 221, 232, 251, 263, 292
BtgI CCRYGG 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 408
BtuMI TCGCGA 2 cut(s) 168, 393
Cac8I GCNNGC 4 cut(s) 115, 223, 273, 321
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 5 cut(s) 206, 219, 220, 230, 231
Cfr42I CCGCGG 1 cut(s) 261
CseI GACGC 3 cut(s) 29, 93, 234
CviAII CATG 2 cut(s) 242, 407
DdeI CTNAG 4 cut(s) 30, 253, 279, 369
DpnI GATC 2 cut(s) 197, 388
DpnII GATC 2 cut(s) 195, 386
EaeI YGGCCR 3 cut(s) 60, 261, 290
EagI CGGCCG 3 cut(s) 60, 261, 290
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
EciI GGCGGA 1 cut(s) 329
EclXI CGGCCG 3 cut(s) 60, 261, 290
Eco24I GRGCYC 2 cut(s) 223, 234
Eco52I CGGCCG 3 cut(s) 60, 261, 290
EcoO109I RGGNCCY 2 cut(s) 219, 230
EcoRII CCWGG 1 cut(s) 225
EcoT38I GRGCYC 2 cut(s) 223, 234
Esp3I CGTCTC 2 cut(s) 12, 76
FaeI CATG 2 cut(s) 245, 410
FaiI YATR 3 cut(s) 243, 362, 408
FatI CATG 2 cut(s) 241, 406
FauI CCCGC 2 cut(s) 230, 312
Fnu4HI GCNGC 9 cut(s) 48, 63, 88, 118, 127, 258, 261, 276, 290
FriOI GRGCYC 2 cut(s) 223, 234
Fsp4HI GCNGC 9 cut(s) 48, 63, 88, 118, 127, 258, 261, 276, 290
GlaI GCGC 1 cut(s) 91
GluI GCNGC 9 cut(s) 48, 63, 88, 118, 127, 258, 261, 276, 290
HaeIII GGCC 9 cut(s) 62, 99, 113, 207, 221, 232, 251, 263, 292
HapII CCGG 6 cut(s) 24, 38, 59, 93, 132, 293
HgaI GACGC 3 cut(s) 29, 93, 234
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 2 cut(s) 21, 85
Hin1II CATG 2 cut(s) 245, 410
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 2 cut(s) 53, 163
HpaII CCGG 6 cut(s) 24, 38, 59, 93, 132, 293
HphI GGTGA 2 cut(s) 179, 440
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 195, 282
Hpy188III TCNNGA 3 cut(s) 81, 167, 392
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 3 cut(s) 154, 250, 307
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 150
HpyF3I CTNAG 4 cut(s) 30, 253, 279, 369
Hsp92I GRCGYC 2 cut(s) 21, 85
Hsp92II CATG 2 cut(s) 245, 410
HspAI GCGC 1 cut(s) 90
KspI CCGCGG 1 cut(s) 261
Kzo9I GATC 2 cut(s) 195, 386
LguI GCTCTTC 1 cut(s) 142
LmnI GCTCC 3 cut(s) 134, 295, 316
Lsp1109I GCAGC 2 cut(s) 129, 262
LweI GCATC 1 cut(s) 385
MalI GATC 2 cut(s) 197, 388
MbiI CCGCTC 1 cut(s) 319
MboI GATC 2 cut(s) 195, 386
MboII GAAGA 3 cut(s) 17, 69, 129
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 2 cut(s) 223, 234
MluCI AATT 1 cut(s) 465
MlyI GAGTC 2 cut(s) 47, 157
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 9 cut(s) 45, 89, 131, 201, 210, 262, 304, 337, 346
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 2 cut(s) 260, 275
MspI CCGG 6 cut(s) 24, 38, 59, 93, 132, 293
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 5 cut(s) 15, 90, 168, 260, 393
NdeII GATC 2 cut(s) 195, 386
NlaIII CATG 2 cut(s) 245, 410
NlaIV GGNNCC 5 cut(s) 130, 221, 231, 232, 414
NmeAIII GCCGAG 2 cut(s) 91, 102
NruI TCGCGA 2 cut(s) 168, 393
PciSI GCTCTTC 1 cut(s) 142
PkrI GCNGC 9 cut(s) 49, 64, 89, 119, 128, 259, 262, 277, 291
PleI GAGTC 2 cut(s) 47, 157
PpsI GAGTC 2 cut(s) 47, 157
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 5 cut(s) 130, 221, 231, 232, 414
PspOMI GGGCCC 2 cut(s) 219, 230
PspPI GGNCC 5 cut(s) 206, 219, 220, 230, 231
PsuI RGATCY 1 cut(s) 386
PvuII CAGCTG 1 cut(s) 275
RruI TCGCGA 2 cut(s) 168, 393
RseI CAYNNNNRTG 1 cut(s) 426
SacII CCGCGG 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 142
SatI GCNGC 9 cut(s) 48, 63, 88, 118, 127, 258, 261, 276, 290
Sau3AI GATC 2 cut(s) 195, 386
Sau96I GGNCC 5 cut(s) 206, 219, 220, 230, 231
SchI GAGTC 2 cut(s) 47, 157
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 2 cut(s) 223, 234
SetI ASST 2 cut(s) 277, 370
SfaNI GCATC 1 cut(s) 385
Sfr303I CCGCGG 1 cut(s) 261
SgrBI CCGCGG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 426
Sse9I AATT 1 cut(s) 465
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 80, 152
TasI AATT 1 cut(s) 465
TauI GCSGC 7 cut(s) 50, 65, 90, 129, 260, 263, 292
TseI GCWGC 2 cut(s) 117, 275
TspDTI ATGAA 1 cut(s) 129
XapI RAATTY 1 cut(s) 465
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.