Rmu_co8124068.1_g000001
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8124068.1
N/A
Physical Location & Seq
Reverse (-)
1 .. 563
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8124068.1_g000001.1.cds

Sequence Viewer

Length: 324 bp
atgggggtgcttttcagcctttccaaagggagaaaggcattgggaagactaatggggcagtggcgaagtcgcctgcttccgctccggccactagctcaaccgctgacaccgtcagcggcggcagcggcggtggaaacagcaagaaggaagataaggaggggcagaggaaacagaggcggaactggtcgccggagttgcatcgccggttcttgcatgcccttcagcagcttggtggctcgcacagtatctgctacacctaagcaaattagagagctaatgaaggttgatgggcttactaatgatgaagtcaaaagccatttacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

108

Amino Acids

11.71

Weight (kDa)

11.95

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 82
AciI CCGC 7 cut(s) 80, 101, 116, 119, 125, 128, 177
AcoI YGGCCR 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 205
AluBI AGCT 3 cut(s) 95, 228, 274
AluI AGCT 3 cut(s) 95, 228, 274
AlwNI CAGNNNCTG 1 cut(s) 248
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 122, 225
BbsI GAAGAC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 134, 237
BccI CCATC 1 cut(s) 281
BfaI CTAG 1 cut(s) 92
BisI GCNGC 5 cut(s) 117, 120, 123, 126, 226
BlsI GCNGC 5 cut(s) 118, 121, 124, 127, 227
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 52
Bpu10I CCTNAGC 1 cut(s) 258
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 134, 237
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 3 cut(s) 85, 190, 204
BsnI GGCC 1 cut(s) 88
BspACI CCGC 7 cut(s) 80, 101, 116, 119, 125, 128, 177
BspANI GGCC 1 cut(s) 88
BsrBI CCGCTC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 111, 244
BstC8I GCNNGC 3 cut(s) 74, 215, 238
BstDEI CTNAG 1 cut(s) 258
BstMWI GCNNNNNNNGC 3 cut(s) 122, 125, 195
BstNSI RCATGY 1 cut(s) 217
BstV1I GCAGC 2 cut(s) 134, 237
BstV2I GAAGAC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 88
BtgZI GCGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 74, 215, 238
CaiI CAGNNNCTG 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 203
CviAII CATG 1 cut(s) 214
CviJI RGCY 8 cut(s) 18, 88, 95, 228, 236, 274, 292, 315
CviKI_1 RGCY 8 cut(s) 18, 88, 95, 228, 236, 274, 292, 315
DdeI CTNAG 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 86
EciI GGCGGA 1 cut(s) 192
Eco57I CTGAAG 1 cut(s) 205
FaeI CATG 1 cut(s) 217
FaiI YATR 1 cut(s) 215
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 5 cut(s) 117, 120, 123, 126, 226
Fsp4HI GCNGC 5 cut(s) 117, 120, 123, 126, 226
FspBI CTAG 1 cut(s) 92
GluI GCNGC 5 cut(s) 117, 120, 123, 126, 226
HaeIII GGCC 1 cut(s) 88
HapII CCGG 3 cut(s) 85, 190, 204
Hin1II CATG 1 cut(s) 217
HpaII CCGG 3 cut(s) 85, 190, 204
HpyAV CCTTC 3 cut(s) 138, 229, 274
HpyCH4III ACNGT 2 cut(s) 111, 244
HpyCH4V TGCA 2 cut(s) 198, 213
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 125, 195
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 1 cut(s) 217
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 5 cut(s) 86, 98, 168, 203, 217
Lsp1109I GCAGC 2 cut(s) 134, 237
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 92
MbiI CCGCTC 1 cut(s) 82
MboII GAAGA 2 cut(s) 57, 160
MluCI AATT 1 cut(s) 264
MnlI CCTC 3 cut(s) 150, 158, 167
MspA1I CMGCKG 3 cut(s) 103, 116, 125
MspI CCGG 3 cut(s) 85, 190, 204
MwoI GCNNNNNNNGC 3 cut(s) 122, 125, 195
NlaIII CATG 1 cut(s) 217
NspI RCATGY 1 cut(s) 217
PaeI GCATGC 1 cut(s) 217
PflFI GACNNNGTC 1 cut(s) 109
PkrI GCNGC 5 cut(s) 118, 121, 124, 127, 227
PstNI CAGNNNCTG 1 cut(s) 248
PsyI GACNNNGTC 1 cut(s) 109
SatI GCNGC 5 cut(s) 117, 120, 123, 126, 226
SetI ASST 5 cut(s) 97, 230, 259, 276, 285
SfaNI GCATC 1 cut(s) 207
SphI GCATGC 1 cut(s) 217
Sse9I AATT 1 cut(s) 264
SsiI CCGC 7 cut(s) 80, 101, 116, 119, 125, 128, 177
SspMI CTAG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 111, 244
TasI AATT 1 cut(s) 264
TauI GCSGC 3 cut(s) 119, 122, 128
TscAI CASTG 1 cut(s) 65
TseI GCWGC 2 cut(s) 122, 225
TspDTI ATGAA 2 cut(s) 293, 318
TspRI CASTG 1 cut(s) 65
Tth111I GACNNNGTC 1 cut(s) 109
XceI RCATGY 1 cut(s) 217
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.