RLG00000008390
MYB Family

Protein ALWAYS EARLY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
N/A
Physical Location & Seq
Reverse (-)
29971406 .. 29972459
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008390

Sequence Viewer

Length: 306 bp
ATGAAAGCTGTTTCTACTGTCAACCTGAATAGCACTGCTGTTCCTTGTCATCTTCTGCCGACAACTCCTCAAACCAACAAATCATCAAAGCATATAGAGCTAAGGAAGCTGATGCATGTACGAGCTCTGTTTGAGTTGACCCGTGCACTTGACAAAAAGGATGCCGTGGTTTGTGAGTTGAGGCACTTGAATGATGAGGCGTTTGAAAAGTGCAGAGATGGAGATGACTCTATCAAGGATTCTGACCCTTTTAAGGAATATGCTGCAGTACTATTACAGTTGAGCGAAACTAATGATCAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04218 map04218
Pfam Domains
Protein Families
DIRP Myb_DNA-binding

Protein Analysis

102

Amino Acids

11.39

Weight (kDa)

6.05

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 120, 270
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 2 cut(s) 190, 206
AluBI AGCT 4 cut(s) 8, 100, 109, 125
AluI AGCT 4 cut(s) 8, 100, 109, 125
Alw21I GWGCWC 2 cut(s) 127, 148
Alw44I GTGCAC 1 cut(s) 144
ApaLI GTGCAC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 127
Bbv12I GWGCWC 2 cut(s) 127, 148
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 149
BclI TGATCA 1 cut(s) 295
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmcAI AGTACT 1 cut(s) 270
BmsI GCATC 2 cut(s) 102, 151
Bpu10I CCTNAGC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 232
BsiHKAI GWGCWC 2 cut(s) 127, 148
BslI CCNNNNNNNGG 1 cut(s) 253
Bsp1286I GDGCHC 2 cut(s) 127, 148
Bsp143I GATC 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 19, 279
BstDEI CTNAG 1 cut(s) 101
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 97, 106
BstNSI RCATGY 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 250
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Csp6I GTAC 2 cut(s) 119, 269
CviAII CATG 1 cut(s) 116
CviJI RGCY 4 cut(s) 8, 100, 109, 125
CviKI_1 RGCY 4 cut(s) 8, 100, 109, 125
CviQI GTAC 2 cut(s) 119, 269
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Ecl136II GAGCTC 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 117
EcoT38I GRGCYC 1 cut(s) 127
FaeI CATG 1 cut(s) 119
FaiI YATR 5 cut(s) 93, 95, 117, 261, 304
FatI CATG 1 cut(s) 115
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
Hin1II CATG 1 cut(s) 119
HincII GTYRAC 2 cut(s) 22, 138
HindII GTYRAC 2 cut(s) 22, 138
HinfI GANTC 2 cut(s) 227, 239
Hpy166II GTNNAC 3 cut(s) 22, 138, 146
Hpy188I TCNGA 1 cut(s) 244
Hpy8I GTNNAC 3 cut(s) 22, 138, 146
HpyCH4III ACNGT 2 cut(s) 19, 279
HpyCH4V TGCA 4 cut(s) 115, 146, 213, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 106
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 1 cut(s) 295
LpnPI CCDG 2 cut(s) 38, 284
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 102, 151
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 127, 148
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 3 cut(s) 78, 174, 190
Mph1103I ATGCAT 1 cut(s) 117
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 97, 106
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 117
NspI RCATGY 1 cut(s) 119
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 268
RsaI GTAC 2 cut(s) 120, 270
RsaNI GTAC 2 cut(s) 119, 269
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 295
ScaI AGTACT 1 cut(s) 270
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 2 cut(s) 127, 148
SetI ASST 6 cut(s) 10, 27, 102, 111, 127, 303
SfaNI GCATC 2 cut(s) 102, 151
SfcI CTRYAG 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 189
SstI GAGCTC 1 cut(s) 127
TaaI ACNGT 2 cut(s) 19, 279
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 40
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 40
VneI GTGCAC 1 cut(s) 144
XceI RCATGY 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.