RLG00000001841
MYB Family

RADIALIS-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
N/A
Physical Location & Seq
Reverse (-)
21696908 .. 21697644
737 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001841

Sequence Viewer

Length: 339 bp
ATGGGAGAGACATCACTTGGCCTCGACTACACACAAGCCGTACAACTCACCGTCAAGAACAAGATTGAGATAAATTATATGTTGAGAGGAGAAAAAAAGAAGTTTGAGCTAGCTTTGGCTGTGGTTGATGAACAAGACCCACATTGCTGGGAAATAGTTGCAGCCTTGGTTGGAGGCAATAAAAGTGCAAAGAATGTGGACAAACATTATGTCATTCTTTTGGAGGATTTGAAGTTATCGTCTTTATCCTCTGCCCCCTTTATTCTCGTCGAGCTCTGTAACGTCTACCGCCTGACCAATAAGATATGTGGGGTGCTCAGTTCAGATCTTACCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.38

Weight (kDa)

5.63

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 285
AciI CCGC 2 cut(s) 289, 333
AfaI GTAC 1 cut(s) 42
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 3 cut(s) 109, 113, 274
AluI AGCT 3 cut(s) 109, 113, 274
Alw21I GWGCWC 2 cut(s) 276, 318
Alw26I GTCTC 1 cut(s) 2
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
AsuHPI GGTGA 1 cut(s) 40
AsuNHI GCTAGC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 2 cut(s) 276, 318
BbvI GCAGC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 110
BglII AGATCT 1 cut(s) 325
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmtI GCTAGC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 173
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 276, 318
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 276, 318
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 2 cut(s) 289, 333
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 330
BspOI GCTAGC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 317
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 147
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 41
CspCI CAANNNNNGTGG 2 cut(s) 177, 212
CviJI RGCY 7 cut(s) 21, 38, 109, 113, 119, 164, 274
CviKI_1 RGCY 7 cut(s) 21, 38, 109, 113, 119, 164, 274
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 317
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 165
FaiI YATR 4 cut(s) 78, 80, 210, 307
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 162
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 151
HaeIII GGCC 1 cut(s) 21
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 199, 286
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 199, 286
Hpy99I CGWCG 1 cut(s) 272
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 2 cut(s) 161, 188
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 282
Kzo9I GATC 1 cut(s) 325
LpnPI CCDG 2 cut(s) 133, 305
Lsp1109I GCAGC 1 cut(s) 173
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 2 cut(s) 276, 318
MluCI AATT 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 5 cut(s) 32, 80, 167, 217, 259
NdeII GATC 1 cut(s) 325
NheI GCTAGC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SacI GAGCTC 1 cut(s) 276
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 325
SduI GDGCHC 2 cut(s) 276, 318
SetI ASST 4 cut(s) 111, 115, 276, 285
Sse9I AATT 1 cut(s) 73
SsiI CCGC 2 cut(s) 289, 333
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 276
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 24, 270
TasI AATT 1 cut(s) 73
TseI GCWGC 1 cut(s) 161
TspDTI ATGAA 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.